Variant report

Variant	rs6739861
Chromosome Location	chr2:114576318-114576319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114574865..114577393-chr2:114628655..114630821,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11684493	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11695436	0.81[EUR][1000 genomes]
rs11899742	0.80[EUR][1000 genomes]
rs12995205	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13009468	0.83[EUR][1000 genomes]
rs13020510	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13025971	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13026880	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1949722	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34169450	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34775317	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35392321	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35893878	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35905948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4544443	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60022746	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542174	0.80[EUR][1000 genomes]
rs71416564	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71416565	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74182871	0.93[EUR][1000 genomes]
rs7591643	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:114575400-114576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:114575400-114576400	Enhancers	Lung	lung
5	chr2:114575400-114576400	Enhancers	Pancreas	Pancrea
6	chr2:114575400-114576400	Active TSS	Right Atrium	heart
7	chr2:114575400-114576800	Enhancers	HUVEC	blood vessel
8	chr2:114575400-114577200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:114575400-114577200	Enhancers	Fetal Intestine Small	intestine
10	chr2:114575400-114578000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:114575400-114578200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:114575400-114578200	Enhancers	Fetal Intestine Large	intestine
13	chr2:114575600-114576400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:114575600-114576400	Enhancers	Psoas Muscle	Psoas
15	chr2:114575600-114576400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr2:114575600-114576600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:114575600-114576800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:114575600-114577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:114575600-114577000	Enhancers	Fetal Kidney	kidney
20	chr2:114575600-114577000	Enhancers	Rectal Smooth Muscle	rectum
21	chr2:114575600-114577000	Enhancers	HSMM	muscle
22	chr2:114575600-114577200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:114575800-114576400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:114575800-114576400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:114575800-114576400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr2:114575800-114576400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:114575800-114576400	Enhancers	Fetal Stomach	stomach
28	chr2:114575800-114576600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr2:114575800-114576600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:114575800-114576600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:114575800-114576600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:114575800-114576600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:114575800-114576600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr2:114575800-114576600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:114575800-114576600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr2:114575800-114576600	Flanking Active TSS	A549	lung
37	chr2:114575800-114576600	Flanking Active TSS	NH-A	brain
38	chr2:114575800-114576600	Flanking Active TSS	Osteobl	bone
39	chr2:114575800-114576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:114575800-114576800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr2:114575800-114576800	Enhancers	Fetal Heart	heart
42	chr2:114575800-114577000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:114575800-114577200	Weak transcription	Ovary	ovary
44	chr2:114576000-114576400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:114576000-114576400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr2:114576000-114576400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr2:114576000-114576400	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr2:114576000-114576400	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr2:114576000-114576400	Enhancers	Esophagus	oesophagus
50	chr2:114576000-114576400	Flanking Active TSS	Fetal Lung	lung

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