Variant report

Variant	rs11686283
Chromosome Location	chr2:114628834-114628835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114574865..114577393-chr2:114628655..114630821,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10496454	0.81[CEU][hapmap]
rs11676592	1.00[AFR][1000 genomes]
rs11680166	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11681425	0.81[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap]
rs11684493	0.81[EUR][1000 genomes]
rs11695436	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs12995205	0.81[EUR][1000 genomes]
rs13020510	0.81[EUR][1000 genomes]
rs13023671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17046767	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1949722	0.81[EUR][1000 genomes]
rs2046545	0.81[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap]
rs2292100	0.81[CEU][hapmap]
rs34775317	0.81[EUR][1000 genomes]
rs35820702	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3748997	0.81[CEU][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap]
rs60022746	0.81[EUR][1000 genomes]
rs71416564	0.81[EUR][1000 genomes]
rs71416565	0.81[EUR][1000 genomes]
rs71416580	1.00[AFR][1000 genomes]
rs74182871	0.81[EUR][1000 genomes]
rs7590041	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11686283	RPL23AP7	cis	Whole Blood	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:114613200-114631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:114619000-114631400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
7	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:114625800-114633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:114626200-114631600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:114626400-114635000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:114626600-114629800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:114626600-114631200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:114626600-114634200	Weak transcription	Thymus	Thymus
14	chr2:114626600-114634400	Weak transcription	Pancreas	Pancrea
15	chr2:114626800-114631200	Weak transcription	Fetal Thymus	thymus
16	chr2:114626800-114631400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:114626800-114635000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr2:114627400-114629600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:114628400-114629800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:114628800-114629600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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