Variant report

Variant	rs10496454
Chromosome Location	chr2:114653274-114653275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114510034..114517579-chr2:114643441..114655407,23	MCF-7	breast:
2	chr2:114651373..114654113-chr2:114668115..114670436,3	K562	blood:
3	chr2:114512332..114515034-chr2:114651411..114654635,3	MCF-7	breast:
4	chr2:114645610..114649008-chr2:114652847..114656238,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11676281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680166	0.85[EUR][1000 genomes]
rs11681425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684493	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11695436	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12995205	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12996997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13011246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13020510	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13023671	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17045951	1.00[CHB][hapmap];0.87[JPT][hapmap];0.98[ASN][1000 genomes]
rs17046767	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17197639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1949722	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2046545	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34775317	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34803179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35596137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35680405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35820702	0.85[EUR][1000 genomes]
rs35893878	0.80[ASN][1000 genomes]
rs3748997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60022746	0.84[AMR][1000 genomes]
rs6711054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6723553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71416564	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71416565	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71416571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72952576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72954508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7590041	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114648800-114653400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:114649200-114653400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
7	chr2:114649400-114654000	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr2:114649400-114655200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:114649800-114653800	Weak transcription	Fetal Stomach	stomach
11	chr2:114649800-114655600	Enhancers	Small Intestine	intestine
12	chr2:114650000-114654400	Weak transcription	Fetal Intestine Small	intestine
13	chr2:114650000-114655600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:114650200-114653400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr2:114650200-114653400	Strong transcription	Fetal Thymus	thymus
16	chr2:114650200-114653800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:114650200-114654200	Genic enhancers	HSMM	muscle
18	chr2:114650200-114654600	Genic enhancers	Dnd41	blood
19	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
20	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
21	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
22	chr2:114650400-114654400	Weak transcription	Fetal Lung	lung
23	chr2:114650400-114655400	Weak transcription	Fetal Intestine Large	intestine
24	chr2:114650600-114654200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:114650800-114653800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:114651000-114653600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
27	chr2:114651000-114653600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:114651200-114654200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr2:114651200-114655800	Enhancers	Brain Hippocampus Middle	brain
30	chr2:114651400-114653600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:114651400-114653600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr2:114651400-114654000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:114651400-114654600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr2:114651600-114653600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:114651600-114653800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr2:114651800-114653800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
38	chr2:114652000-114653400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
39	chr2:114652000-114653600	Enhancers	H9 Cell Line	embryonic stem cell
40	chr2:114652000-114654200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr2:114652000-114654400	Enhancers	Thymus	Thymus
42	chr2:114652000-114656000	Enhancers	NHLF	lung
43	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
44	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
46	chr2:114652200-114653400	Weak transcription	Brain Substantia Nigra	brain
47	chr2:114652200-114653400	Weak transcription	Psoas Muscle	Psoas
48	chr2:114652200-114653400	Weak transcription	Spleen	Spleen
49	chr2:114652200-114653600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:114652200-114654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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