Variant report

Variant	rs2292100
Chromosome Location	chr2:114718893-114718894
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114717441..114718963-chr2:114722570..114724264,2	K562	blood:
2	chr2:114714504..114716688-chr2:114718295..114720604,2	K562	blood:
3	chr2:114710094..114711619-chr2:114718178..114719858,2	K562	blood:
4	chr2:114511724..114513896-chr2:114718190..114720983,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10496454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11676281	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11678413	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11680166	0.85[EUR][1000 genomes]
rs11681425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11684493	0.84[AMR][1000 genomes]
rs11695436	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12995205	0.84[AMR][1000 genomes]
rs12996997	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13011246	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13020510	0.84[AMR][1000 genomes]
rs13023671	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1394165	0.81[JPT][hapmap]
rs17045861	0.87[JPT][hapmap]
rs17045951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17046767	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17197639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1949722	0.84[AMR][1000 genomes]
rs2046545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34775317	0.84[AMR][1000 genomes]
rs34803179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35596137	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35680405	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35820702	0.85[EUR][1000 genomes]
rs3748997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60022746	0.84[AMR][1000 genomes]
rs6711054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6723553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71416564	0.84[AMR][1000 genomes]
rs71416565	0.84[AMR][1000 genomes]
rs71416571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72952576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72954508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7590041	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
3	chr2:114670800-114719000	Strong transcription	Dnd41	blood
4	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:114681600-114719400	Strong transcription	NH-A	brain
9	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
14	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:114688400-114719200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:114688600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:114691800-114719800	Strong transcription	HSMM	muscle
18	chr2:114693200-114720000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr2:114695200-114720200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr2:114696000-114720200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:114696400-114719400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr2:114696600-114719200	Strong transcription	GM12878-XiMat	blood
23	chr2:114696600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:114696600-114719400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr2:114701600-114720200	Weak transcription	Fetal Heart	heart
26	chr2:114703600-114719800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr2:114703600-114720000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:114703600-114722400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:114705000-114720400	Weak transcription	Psoas Muscle	Psoas
30	chr2:114705200-114731200	Weak transcription	Lung	lung
31	chr2:114705200-114733000	Weak transcription	Pancreas	Pancrea
32	chr2:114705200-114734200	Weak transcription	Right Ventricle	heart
33	chr2:114705200-114736000	Weak transcription	Gastric	stomach
34	chr2:114705200-114737600	Weak transcription	Esophagus	oesophagus
35	chr2:114706200-114723000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:114706200-114723600	Weak transcription	Brain Hippocampus Middle	brain
37	chr2:114706200-114723800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:114706200-114731400	Weak transcription	Aorta	Aorta
39	chr2:114706200-114731400	Weak transcription	Spleen	Spleen
40	chr2:114706400-114720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:114707000-114719400	Strong transcription	Primary B cells from cord blood	blood
42	chr2:114707400-114726800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:114709200-114731200	Weak transcription	Fetal Kidney	kidney
44	chr2:114710400-114728000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr2:114710400-114735800	Weak transcription	Colonic Mucosa	Colon
46	chr2:114710600-114725400	Weak transcription	Small Intestine	intestine
47	chr2:114710600-114727400	Weak transcription	Thymus	Thymus
48	chr2:114711200-114735400	Weak transcription	Fetal Lung	lung
49	chr2:114711800-114735400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr2:114713400-114723600	Weak transcription	Brain Substantia Nigra	brain

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