Variant report

Variant	rs11681211
Chromosome Location	chr2:179695237-179695238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTN-1	chr2:179694996-179695522	NONHSAT075820

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10497521	0.91[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs11693319	0.83[GIH][hapmap]
rs17356103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17453312	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2046778	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs35813871	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62176572	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62176574	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs726215	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:179685200-179698800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:179685600-179698200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:179685800-179698000	Weak transcription	Fetal Heart	heart
5	chr2:179690600-179701800	Weak transcription	Lung	lung
6	chr2:179690600-179701800	Weak transcription	Pancreas	Pancrea
7	chr2:179692600-179695600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:179692600-179695600	Enhancers	Fetal Lung	lung
9	chr2:179692600-179695800	Enhancers	Fetal Brain Male	brain
10	chr2:179692600-179695800	Enhancers	Fetal Brain Female	brain
11	chr2:179693000-179701600	Weak transcription	Adipose Nuclei	Adipose
12	chr2:179693000-179709200	Weak transcription	Aorta	Aorta
13	chr2:179693400-179695600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:179693400-179695600	Enhancers	Right Atrium	heart
15	chr2:179693400-179701800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr2:179693400-179712600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:179693400-179726000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:179693800-179695600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:179694000-179695600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr2:179694000-179695600	Enhancers	Ovary	ovary
21	chr2:179694000-179710000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:179694200-179713400	Weak transcription	Spleen	Spleen
23	chr2:179694400-179695600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:179694400-179701400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr2:179694400-179701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:179694600-179695400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:179694600-179695600	Strong transcription	Primary T cells from cord blood	blood
28	chr2:179694600-179695600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr2:179694600-179698600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:179695000-179695600	Strong transcription	Fetal Muscle Leg	muscle
31	chr2:179695000-179695600	Enhancers	Left Ventricle	heart
32	chr2:179695000-179695600	Enhancers	Psoas Muscle	Psoas
33	chr2:179695000-179695800	Enhancers	Fetal Intestine Large	intestine
34	chr2:179695000-179695800	Strong transcription	HSMMtube	muscle
35	chr2:179695200-179695400	Enhancers	Brain Germinal Matrix	brain
36	chr2:179695200-179695600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr2:179695200-179695800	Enhancers	Right Ventricle	heart
38	chr2:179695200-179695800	Enhancers	HUVEC	blood vessel

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