Variant report

Variant	rs17453312
Chromosome Location	chr2:179695728-179695729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10185678	0.81[JPT][hapmap]
rs10186056	0.82[JPT][hapmap]
rs11681211	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12052272	1.00[JPT][hapmap]
rs12988301	1.00[JPT][hapmap]
rs13033688	1.00[JPT][hapmap]
rs16866535	0.81[JPT][hapmap]
rs16866554	1.00[JPT][hapmap]
rs2046778	0.87[CEU][hapmap]
rs6433735	0.89[ASN][1000 genomes]
rs7591759	0.85[ASN][1000 genomes]
rs962285	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:179685200-179698800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:179685600-179698200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:179685800-179698000	Weak transcription	Fetal Heart	heart
5	chr2:179690600-179701800	Weak transcription	Lung	lung
6	chr2:179690600-179701800	Weak transcription	Pancreas	Pancrea
7	chr2:179692600-179695800	Enhancers	Fetal Brain Male	brain
8	chr2:179692600-179695800	Enhancers	Fetal Brain Female	brain
9	chr2:179693000-179701600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:179693000-179709200	Weak transcription	Aorta	Aorta
11	chr2:179693400-179701800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:179693400-179712600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:179693400-179726000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:179694000-179710000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:179694200-179713400	Weak transcription	Spleen	Spleen
16	chr2:179694400-179701400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr2:179694400-179701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:179694600-179698600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:179695000-179695800	Enhancers	Fetal Intestine Large	intestine
20	chr2:179695000-179695800	Strong transcription	HSMMtube	muscle
21	chr2:179695200-179695800	Enhancers	Right Ventricle	heart
22	chr2:179695200-179695800	Enhancers	HUVEC	blood vessel
23	chr2:179695600-179696600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:179695600-179698200	Weak transcription	Primary T cells from cord blood	blood
25	chr2:179695600-179698400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:179695600-179698800	Weak transcription	Left Ventricle	heart
27	chr2:179695600-179698800	Weak transcription	Right Atrium	heart
28	chr2:179695600-179701200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:179695600-179701400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:179695600-179701600	Weak transcription	Fetal Muscle Leg	muscle
31	chr2:179695600-179709000	Weak transcription	Ovary	ovary
32	chr2:179695600-179712600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:179695600-179712600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:179695600-179713000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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