Variant report

Variant	rs2046778
Chromosome Location	chr2:179672547-179672548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10497521	0.82[TSI][hapmap]
rs10497522	0.82[CHB][hapmap]
rs10497524	0.90[CHB][hapmap]
rs10497525	0.90[CHB][hapmap]
rs11681211	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11887915	0.90[CHB][hapmap]
rs11897386	0.86[CHB][hapmap]
rs11904138	0.90[CHB][hapmap]
rs12693168	0.90[CHB][hapmap]
rs1552280	1.00[CHB][hapmap]
rs17356103	0.93[EUR][1000 genomes]
rs17453312	0.87[CEU][hapmap]
rs1872202	0.90[CHB][hapmap]
rs1905521	0.89[CHB][hapmap]
rs2029396	0.94[ASN][1000 genomes]
rs2035496	0.90[CHB][hapmap]
rs2054706	0.90[CHB][hapmap]
rs2054707	0.90[CHB][hapmap]
rs2291301	0.90[CHB][hapmap]
rs2291302	0.82[CHB][hapmap]
rs2291303	0.90[CHB][hapmap]
rs2306637	0.90[CHB][hapmap]
rs35813871	0.85[EUR][1000 genomes]
rs3754949	0.90[CHB][hapmap]
rs3754950	0.90[CHB][hapmap]
rs3769859	0.81[CHB][hapmap]
rs3769862	0.90[CHB][hapmap]
rs3816781	0.90[CHB][hapmap]
rs4894049	0.90[CHB][hapmap]
rs58025762	0.94[ASN][1000 genomes]
rs62176572	0.96[EUR][1000 genomes]
rs62176574	0.96[EUR][1000 genomes]
rs719201	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179656800-179674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:179664800-179673000	Active TSS	Right Atrium	heart
5	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:179667200-179673000	Active TSS	Right Ventricle	heart
7	chr2:179668400-179673000	ZNF genes & repeats	Fetal Heart	heart
8	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:179669800-179673200	Active TSS	Fetal Muscle Leg	muscle
10	chr2:179669800-179674600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:179670000-179672800	Active TSS	Fetal Muscle Trunk	muscle
12	chr2:179670000-179674000	Active TSS	Psoas Muscle	Psoas
13	chr2:179670000-179674000	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr2:179671200-179674000	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr2:179671400-179672600	Enhancers	Gastric	stomach
16	chr2:179671400-179672600	Enhancers	Pancreas	Pancrea
17	chr2:179671800-179673000	Active TSS	Left Ventricle	heart
18	chr2:179672000-179672600	Enhancers	Fetal Thymus	thymus
19	chr2:179672200-179672800	Flanking Active TSS	HSMMtube	muscle
20	chr2:179672400-179672600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:179672400-179672600	Bivalent Enhancer	Fetal Brain Male	brain
22	chr2:179672400-179673000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:179672400-179673000	Enhancers	HSMM	muscle

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