Variant report

Variant	rs2029396
Chromosome Location	chr2:179680047-179680048
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10497522	0.81[CHB][hapmap]
rs10497524	0.90[CHB][hapmap]
rs10497525	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs11887915	0.90[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11904138	0.90[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12693168	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs1552280	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1872202	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs1905521	0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2035496	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2046778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2054706	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2054707	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2291301	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2291302	0.81[CHB][hapmap];1.00[EUR][1000 genomes]
rs2291303	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2306637	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs3754949	0.90[CHB][hapmap]
rs3754950	0.90[CHB][hapmap]
rs3769859	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3769861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3769862	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs3816781	0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs4894049	0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs58025762	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152091	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60305852	1.00[EUR][1000 genomes]
rs61680869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs719201	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs73040366	0.83[EUR][1000 genomes]
rs73973151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
6	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
7	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:179676400-179680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
10	chr2:179678600-179681400	Strong transcription	Primary T cells from cord blood	blood
11	chr2:179679200-179681200	Strong transcription	Fetal Heart	heart

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