Variant report

Variant	rs58025762
Chromosome Location	chr2:179692505-179692506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10497525	1.00[EUR][1000 genomes]
rs11887915	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11904138	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12693168	1.00[EUR][1000 genomes]
rs1552280	1.00[EUR][1000 genomes]
rs1872202	1.00[EUR][1000 genomes]
rs1905521	0.86[EUR][1000 genomes]
rs2029396	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035496	1.00[EUR][1000 genomes]
rs2046778	0.94[ASN][1000 genomes]
rs2054706	1.00[EUR][1000 genomes]
rs2054707	1.00[EUR][1000 genomes]
rs2291301	1.00[EUR][1000 genomes]
rs2291302	1.00[EUR][1000 genomes]
rs2291303	1.00[EUR][1000 genomes]
rs2306637	1.00[EUR][1000 genomes]
rs3769859	1.00[EUR][1000 genomes]
rs3769861	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3769862	1.00[EUR][1000 genomes]
rs3816781	0.86[EUR][1000 genomes]
rs4894049	0.86[EUR][1000 genomes]
rs58152091	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60305852	1.00[EUR][1000 genomes]
rs61680869	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs719201	1.00[EUR][1000 genomes]
rs73040366	0.83[EUR][1000 genomes]
rs73973151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:179685000-179692600	Weak transcription	Right Ventricle	heart
3	chr2:179685000-179693800	Weak transcription	HSMM	muscle
4	chr2:179685000-179694000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:179685200-179692600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:179685200-179694000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr2:179685200-179694000	Weak transcription	HSMMtube	muscle
8	chr2:179685200-179698800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:179685600-179698200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:179685800-179693400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:179685800-179698000	Weak transcription	Fetal Heart	heart
12	chr2:179689400-179693800	Enhancers	HUVEC	blood vessel
13	chr2:179690400-179694000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:179690600-179693000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:179690600-179693000	Weak transcription	Left Ventricle	heart
16	chr2:179690600-179701800	Weak transcription	Lung	lung
17	chr2:179690600-179701800	Weak transcription	Pancreas	Pancrea
18	chr2:179691400-179694400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:179692000-179693400	Strong transcription	Primary T cells from cord blood	blood
20	chr2:179692200-179693000	Enhancers	Aorta	Aorta
21	chr2:179692200-179693200	Enhancers	HepG2	liver
22	chr2:179692200-179694600	Enhancers	Psoas Muscle	Psoas
23	chr2:179692400-179692600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:179692400-179692600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:179692400-179692600	Enhancers	Fetal Muscle Leg	muscle
26	chr2:179692400-179692600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr2:179692400-179693200	Flanking Active TSS	Osteobl	bone
28	chr2:179692400-179694200	Enhancers	NH-A	brain
29	chr2:179692400-179694600	Enhancers	Brain Germinal Matrix	brain

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