Variant report

Variant	rs11683245
Chromosome Location	chr2:67763946-67763947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11126130	0.80[ASN][1000 genomes]
rs11126131	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11679857	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11682942	0.80[ASN][1000 genomes]
rs11689141	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11691819	0.80[EUR][1000 genomes]
rs11694705	0.80[ASN][1000 genomes]
rs12386229	0.80[ASN][1000 genomes]
rs12463558	0.80[ASN][1000 genomes]
rs12476485	0.80[EUR][1000 genomes]
rs12476486	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12476516	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12478439	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17033716	0.80[ASN][1000 genomes]
rs2090799	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2861634	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57485255	0.80[ASN][1000 genomes]
rs58272443	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60984719	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61690466	0.80[EUR][1000 genomes]
rs62155320	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62155325	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62157933	0.80[ASN][1000 genomes]
rs62157935	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6546313	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6739215	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6743509	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7591684	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7591831	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7606107	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3459601	chr2:67758894-67766393	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3459602	chr2:67758894-67766393	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv17789	chr2:67759060-67766216	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2422119	chr2:67760072-67765892	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv2762261	chr2:67760955-67765892	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv441759	chr2:67760955-67765892	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67763800-67764200	ZNF genes & repeats	Pancreas	Pancrea

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