Variant report

Variant	rs61690466
Chromosome Location	chr2:67739674-67739675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67686874..67688918-chr2:67738325..67740744,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11126130	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11126131	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11679857	0.86[EUR][1000 genomes]
rs11682942	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11683245	0.80[EUR][1000 genomes]
rs11685481	0.85[EUR][1000 genomes]
rs11689141	0.85[EUR][1000 genomes]
rs11690525	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11691819	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11694705	0.97[EUR][1000 genomes]
rs12386229	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12463558	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12476485	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476486	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476516	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12478439	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568471	0.97[EUR][1000 genomes]
rs17033716	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2090799	0.86[EUR][1000 genomes]
rs28391396	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2861634	0.86[EUR][1000 genomes]
rs28840464	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57485255	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58272443	0.86[EUR][1000 genomes]
rs60984719	0.86[EUR][1000 genomes]
rs62155320	0.86[EUR][1000 genomes]
rs62157933	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62157935	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6546313	0.85[EUR][1000 genomes]
rs6739215	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743509	0.85[EUR][1000 genomes]
rs726085	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7591684	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7591831	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606107	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7608814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67728200-67742800	Weak transcription	Fetal Lung	lung
2	chr2:67731200-67741400	Weak transcription	NHDF-Ad	bronchial
3	chr2:67738200-67741400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:67738200-67741600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:67738400-67742600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:67738800-67741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:67739600-67741800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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