Variant report

Variant	rs57485255
Chromosome Location	chr2:67746462-67746463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67746421..67749968-chr2:68288445..68290410,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197223	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11126130	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126131	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679857	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11682942	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683245	0.80[ASN][1000 genomes]
rs11685481	0.84[EUR][1000 genomes]
rs11689141	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11690525	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11691819	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11694705	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386229	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463558	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476485	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12476486	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476516	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478439	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568471	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17033716	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090799	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28391396	0.89[EUR][1000 genomes]
rs2861634	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28840464	0.93[EUR][1000 genomes]
rs58272443	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60984719	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61690466	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62155320	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62155325	0.86[ASN][1000 genomes]
rs62157933	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157935	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546313	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6739215	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743509	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs726085	0.89[EUR][1000 genomes]
rs7591684	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591831	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606107	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608814	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67742000-67747000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:67745000-67749800	Weak transcription	Fetal Kidney	kidney
3	chr2:67745200-67749000	Weak transcription	Fetal Stomach	stomach
4	chr2:67745200-67750200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:67745400-67749600	Weak transcription	Fetal Lung	lung

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