Variant report
| Variant | rs11684106 |
|---|---|
| Chromosome Location | chr2:58075701-58075702 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10445894 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1106090 | 0.81[CEU][hapmap] |
| rs1106302 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12622856 | 0.81[JPT][hapmap] |
| rs17049185 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2176931 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2204019 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2678908 | 1.00[YRI][hapmap] |
| rs2678910 | 0.80[AMR][1000 genomes] |
| rs2683622 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2683625 | 0.84[EUR][1000 genomes] |
| rs2716998 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2716999 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2717070 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2717072 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2947350 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2947351 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2953437 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2953438 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2953443 | 0.84[EUR][1000 genomes] |
| rs66490669 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs66985942 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007118 | chr2:57562051-58147588 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv874196 | chr2:57946148-58220320 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv834148 | chr2:57979661-58119213 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010981 | chr2:58013389-58205699 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv874199 | chr2:58031249-58161520 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:58073800-58076000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr2:58073800-58076000 | Weak transcription | Pancreas | Pancrea |
