Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10445894	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1106090	0.81[CEU][hapmap]
rs1106302	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11684106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622856	0.82[JPT][hapmap]
rs17049185	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2204019	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2678910	0.80[AMR][1000 genomes]
rs2683622	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2683625	0.84[EUR][1000 genomes]
rs2716998	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2716999	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2717070	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2717072	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2947350	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2947351	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2953437	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2953438	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2953443	0.84[EUR][1000 genomes]
rs66490669	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66985942	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834148	chr2:57979661-58119213	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58073800-58074200	Weak transcription	Gastric	stomach
2	chr2:58073800-58076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:58073800-58076000	Weak transcription	Pancreas	Pancrea

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