Variant report

Variant	rs10445894
Chromosome Location	chr2:58093903-58093904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58092863..58095736-chr2:58103912..58105798,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1040224	0.85[CHB][hapmap]
rs1040225	0.85[CHB][hapmap]
rs1106090	0.81[CEU][hapmap]
rs1106302	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11684106	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17049185	0.81[EUR][1000 genomes]
rs2176931	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2204019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2465804	0.85[CHB][hapmap]
rs2678870	0.85[CHB][hapmap]
rs2678880	0.84[CHB][hapmap]
rs2678901	0.85[CHB][hapmap]
rs2678903	0.85[CHB][hapmap]
rs2678905	0.85[CHB][hapmap]
rs2678906	0.84[CHB][hapmap]
rs2678908	0.84[CHB][hapmap]
rs2683622	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2683625	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2683628	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2683629	0.84[AMR][1000 genomes]
rs2716998	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2716999	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2717001	0.84[CHB][hapmap]
rs2717002	0.84[CHB][hapmap]
rs2717004	0.85[CHB][hapmap]
rs2717063	0.81[ASN][1000 genomes]
rs2717068	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2717070	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2717072	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2947350	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2947351	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2953437	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2953438	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2953439	0.84[AMR][1000 genomes]
rs2953441	0.82[AMR][1000 genomes]
rs2953443	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66985942	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7598169	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834148	chr2:57979661-58119213	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58090200-58104200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:58092800-58095000	Weak transcription	A549	lung
3	chr2:58093400-58094800	Weak transcription	Muscle Satellite Cultured Cells	--

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