Variant report

Variant	rs116862716
Chromosome Location	chr6:149865218-149865219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:
2	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
3	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
4	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
5	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
6	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
7	chr6:149864025..149866491-chr6:150038497..150040918,2	K562	blood:
8	chr6:149862349..149865484-chr6:149865615..149868739,5	MCF-7	breast:
9	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
10	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000131013	Chromatin interaction
ENSG00000235168	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:149850800-149865600	Weak transcription	Right Ventricle	heart
5	chr6:149852400-149865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:149860800-149865400	Weak transcription	Colonic Mucosa	Colon
7	chr6:149860800-149865400	Weak transcription	Fetal Brain Male	brain
8	chr6:149861000-149865400	Weak transcription	A549	lung
9	chr6:149861000-149865400	Weak transcription	HUVEC	blood vessel
10	chr6:149861000-149865600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:149861000-149865600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:149861000-149865800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149861200-149865800	Weak transcription	Aorta	Aorta
14	chr6:149861200-149865800	Weak transcription	Esophagus	oesophagus
15	chr6:149861600-149865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:149861600-149865400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:149861600-149865400	Weak transcription	HSMMtube	muscle
18	chr6:149861800-149865600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:149861800-149865600	Weak transcription	Fetal Stomach	stomach
20	chr6:149861800-149865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:149861800-149865800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:149861800-149865800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:149861800-149865800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:149861800-149865800	Weak transcription	Lung	lung
25	chr6:149861800-149865800	Weak transcription	Pancreas	Pancrea
26	chr6:149862200-149865400	Weak transcription	Thymus	Thymus
27	chr6:149862200-149865600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:149862200-149865800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:149862200-149865800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:149862200-149865800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:149862200-149865800	Weak transcription	Left Ventricle	heart
32	chr6:149862400-149865600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:149862400-149865600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:149862600-149865800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:149862800-149865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:149862800-149865600	Weak transcription	HMEC	breast
37	chr6:149862800-149865800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:149863200-149865600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:149863400-149865800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr6:149863600-149865400	Enhancers	NHDF-Ad	bronchial
41	chr6:149863600-149865600	Enhancers	Primary T cells from cord blood	blood
42	chr6:149863600-149865600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr6:149863600-149865800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr6:149863800-149865600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:149863800-149865800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr6:149863800-149865800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr6:149863800-149865800	Enhancers	Liver	Liver
48	chr6:149864000-149865600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr6:149864000-149865600	Enhancers	Fetal Brain Female	brain
50	chr6:149864200-149865400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links