Variant report

Variant	rs11687162
Chromosome Location	chr2:86586772-86586773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11903855	1.00[CEU][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12714182	0.88[CEU][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2113607	0.89[CEU][hapmap]
rs2367238	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4832278	0.89[CEU][hapmap];0.84[MEX][hapmap]
rs4832283	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6547680	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6708218	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6708398	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6713586	0.89[CEU][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6718850	0.87[MEX][hapmap]
rs6736462	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6756146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7573005	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11687162	VPS24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86579800-86588200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86582800-86587800	Weak transcription	Pancreas	Pancrea
3	chr2:86585200-86588000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:86585400-86587800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:86586000-86586800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:86586000-86586800	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:86586200-86586800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:86586200-86587200	Enhancers	Fetal Intestine Large	intestine
9	chr2:86586400-86586800	Enhancers	GM12878-XiMat	blood
10	chr2:86586400-86587800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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