Variant report

Variant	rs6756146
Chromosome Location	chr2:86596001-86596002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:79194432..79194952-chr2:86595492..86596036,3	K562	blood:
2	chr2:86446503..86449677-chr2:86593387..86596210,3	MCF-7	breast:
3	chr2:86447923..86448691-chr2:86595098..86596037,5	MCF-7	breast:
4	chr2:86420778..86424048-chr2:86595325..86598515,3	MCF-7	breast:
5	chr2:86525581..86526450-chr2:86595097..86596076,7	MCF-7	breast:
6	chr2:86572451..86574129-chr2:86595066..86597224,2	K562	blood:
7	chr2:86594067..86596122-chr2:86600316..86602892,2	MCF-7	breast:
8	chr2:86593659..86596612-chr2:86598158..86600807,3	K562	blood:
9	chr2:86421063..86423710-chr2:86595515..86598426,3	MCF-7	breast:
10	chr2:86588403..86590513-chr2:86593464..86596116,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273080	Chromatin interaction
ENSG00000132305	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1033288	0.86[ASN][1000 genomes]
rs1033289	0.86[ASN][1000 genomes]
rs11687162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11903855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12714182	0.88[CEU][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1964088	0.82[ASN][1000 genomes]
rs2113607	0.92[CEU][hapmap]
rs2113608	0.96[ASN][1000 genomes]
rs2113609	0.96[ASN][1000 genomes]
rs2367238	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4832278	0.92[CEU][hapmap]
rs4832281	0.96[ASN][1000 genomes]
rs4832283	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547680	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6708218	0.82[AMR][1000 genomes]
rs6708398	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6710124	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6713586	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6720331	0.86[ASN][1000 genomes]
rs6736462	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7573005	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs908789	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86594400-86596200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:86595000-86596200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr2:86595000-86596200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr2:86595000-86596600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:86595200-86596200	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr2:86595400-86596200	Enhancers	Primary B cells from cord blood	blood
7	chr2:86595600-86596200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:86595600-86596200	Enhancers	Liver	Liver
9	chr2:86595800-86596400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:86595800-86597600	Weak transcription	Fetal Stomach	stomach
11	chr2:86595800-86598800	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:86596000-86596200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:86596000-86596200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr2:86596000-86596400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:86596000-86596400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr2:86596000-86597200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr2:86596000-86598200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:86596000-86598200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:86596000-86598400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:86596000-86598400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr2:86596000-86598600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:86596000-86598600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr2:86596000-86598600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:86596000-86598600	Weak transcription	Fetal Lung	lung
25	chr2:86596000-86599400	Weak transcription	Lung	lung
26	chr2:86596000-86599600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:86596000-86600200	Weak transcription	Psoas Muscle	Psoas
28	chr2:86596000-86600400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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