Variant report

Variant	rs4832283
Chromosome Location	chr2:86634420-86634421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10185085	1.00[CHB][hapmap]
rs1033288	1.00[ASN][1000 genomes]
rs1033289	1.00[ASN][1000 genomes]
rs1036940	1.00[CHB][hapmap]
rs11127040	1.00[CHB][hapmap]
rs11127042	1.00[CHB][hapmap]
rs11678201	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11687162	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11693352	1.00[CHB][hapmap]
rs11903855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714182	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12714185	1.00[CHB][hapmap]
rs12714187	1.00[CHB][hapmap]
rs12995117	1.00[CHB][hapmap]
rs1468039	1.00[CHB][hapmap]
rs1518811	1.00[CHB][hapmap]
rs1964087	0.89[ASN][1000 genomes]
rs1964088	0.96[ASN][1000 genomes]
rs2030259	1.00[CHB][hapmap]
rs2044230	1.00[CHB][hapmap]
rs2113607	0.89[CEU][hapmap]
rs2113608	0.89[ASN][1000 genomes]
rs2113609	0.89[ASN][1000 genomes]
rs2367238	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3952742	0.83[ASN][1000 genomes]
rs4832278	0.89[CEU][hapmap]
rs4832281	0.89[ASN][1000 genomes]
rs4832285	1.00[CHB][hapmap]
rs4832289	1.00[CHB][hapmap]
rs4832294	1.00[CHB][hapmap]
rs6547680	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708398	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6713586	0.89[CEU][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6714826	1.00[CHB][hapmap]
rs6720331	1.00[ASN][1000 genomes]
rs6736462	0.84[EUR][1000 genomes]
rs6756146	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7573005	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574389	1.00[CHB][hapmap]
rs908789	1.00[ASN][1000 genomes]
rs950780	1.00[CHB][hapmap]
rs966477	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4832283	VPS24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86634200-86635400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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