Variant report

Variant	rs11690161
Chromosome Location	chr2:86032343-86032344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85981986..85982944-chr2:86031490..86032404,2	MCF-7	breast:
2	chr2:85977362..85978288-chr2:86031431..86032387,4	K562	blood:
3	chr2:85955630..85956514-chr2:86031809..86032395,5	MCF-7	breast:
4	chr2:85977312..85978490-chr2:86031324..86032490,7	MCF-7	breast:
5	chr2:86025368..86028290-chr2:86031457..86033472,3	MCF-7	breast:
6	chr2:85956213..85956765-chr2:86031797..86032400,2	MCF-7	breast:
7	chr2:86019488..86022075-chr2:86030495..86033177,2	K562	blood:

Variant related genes	Relation type
ENSG00000168874	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1105882	0.92[CEU][hapmap];0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13347162	0.85[ASN][1000 genomes]
rs13347170	0.85[ASN][1000 genomes]
rs1518987	0.85[CEU][hapmap];0.83[GIH][hapmap]
rs2049015	1.00[ASW][hapmap];0.84[CEU][hapmap];0.83[JPT][hapmap];0.80[AFR][1000 genomes]
rs7576320	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7579946	0.88[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11690161	KRCC1	cis	parietal	SCAN
rs11690161	REEP1	cis	parietal	SCAN
rs11690161	KCMF1	cis	parietal	SCAN
rs11690161	ELMOD3	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
8	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
9	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
11	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
14	chr2:86030000-86033000	Weak transcription	HepG2	liver
15	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
16	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:86031400-86033200	Enhancers	A549	lung
18	chr2:86031600-86032600	Enhancers	HSMM	muscle
19	chr2:86031600-86033000	Enhancers	Liver	Liver
20	chr2:86031600-86033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:86031800-86033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:86032000-86032800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:86032000-86033000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:86032000-86033200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:86032000-86035400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:86032200-86037400	Weak transcription	Fetal Heart	heart
27	chr2:86032200-86037600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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