Variant report

Variant	rs1518987
Chromosome Location	chr2:86051235-86051236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10445963	0.90[GIH][hapmap]
rs1105882	0.85[CEU][hapmap]
rs11127000	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs11676487	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11690161	0.85[CEU][hapmap];0.83[GIH][hapmap]
rs1518986	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2049015	0.81[CHD][hapmap]
rs6756890	0.96[ASN][1000 genomes]
rs7582218	1.00[ASN][1000 genomes]
rs7609014	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7609098	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7609429	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs9677383	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9678088	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425038	chr2:86049591-86051539	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1518987	ST3GAL5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:86045600-86054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:86049800-86054800	Weak transcription	Lung	lung
6	chr2:86051000-86051400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:86051200-86051400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:86051200-86051400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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