Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:86051590-86052086	HL-60	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-1	chr2:86051119-86052514	ENSG00000229498.1
2	lnc-ATOH8-1	chr2:86051119-86053911	NONHSAT072052

Variant related genes	Relation type
RN7SKP83	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10203518	0.80[AMR][1000 genomes]
rs1105882	0.84[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11127000	0.80[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap]
rs11690161	1.00[ASW][hapmap];0.84[CEU][hapmap];0.83[JPT][hapmap];0.80[AFR][1000 genomes]
rs11900847	0.82[ASN][1000 genomes]
rs13420465	0.94[ASN][1000 genomes]
rs1518986	0.88[CEU][hapmap]
rs1518987	0.81[CHD][hapmap]
rs1607466	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2139200	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2139201	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2176626	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2366946	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4832202	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832203	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4832204	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832205	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7564431	0.81[ASN][1000 genomes]
rs7579946	0.88[ASN][1000 genomes]
rs7609014	0.83[CEU][hapmap]
rs7609098	0.84[CEU][hapmap]
rs7609429	0.83[CEU][hapmap]
rs9677383	0.88[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2049015	VAMP5	cis	cerebellum	SCAN
rs2049015	RNF181	cis	cerebellum	SCAN
rs2049015	POLR1A	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:86045600-86054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:86049800-86054800	Weak transcription	Lung	lung
6	chr2:86051400-86054400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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