Variant report
| Variant | rs11692132 |
|---|---|
| Chromosome Location | chr2:172533621-172533622 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000077380 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10194102 | 0.84[YRI][hapmap] |
| rs10200608 | 0.85[YRI][hapmap] |
| rs10206062 | 0.84[YRI][hapmap] |
| rs10207085 | 0.83[YRI][hapmap] |
| rs10803863 | 0.85[YRI][hapmap] |
| rs11757 | 0.85[YRI][hapmap] |
| rs11904009 | 0.84[YRI][hapmap] |
| rs12185567 | 0.85[YRI][hapmap] |
| rs12692973 | 0.83[YRI][hapmap] |
| rs1554166 | 0.83[YRI][hapmap] |
| rs312924 | 0.83[YRI][hapmap] |
| rs312925 | 0.84[YRI][hapmap] |
| rs3770445 | 0.83[YRI][hapmap] |
| rs3770451 | 0.83[YRI][hapmap] |
| rs3770452 | 0.83[YRI][hapmap] |
| rs6725388 | 0.85[YRI][hapmap] |
| rs6745143 | 0.83[YRI][hapmap] |
| rs6758704 | 0.83[YRI][hapmap] |
| rs6759575 | 0.83[YRI][hapmap] |
| rs908670 | 0.83[YRI][hapmap] |
| rs973889 | 0.85[YRI][hapmap] |
| rs979956 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs979957 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997638 | chr2:172442205-172560406 | Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:7)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11692132 | AC068039.4 | cis | Esophagus Mucosa | GTEx |
| rs11692132 | AC068039.4 | cis | Esophagus Muscularis | GTEx |
| rs11692132 | AC068039.4 | cis | Thyroid | GTEx |
| rs11692132 | AC068039.4 | cis | Muscle Skeletal | GTEx |
| rs11692132 | AC068039.4 | cis | lung | GTEx |
| rs11692132 | AC068039.4 | cis | Whole Blood | GTEx |
| rs11692132 | AC068039.4 | cis | Stomach | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
