Variant report

Variant	rs11697609
Chromosome Location	chr20:23008390-23008391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11696756	0.81[EUR][1000 genomes]
rs11697803	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11698496	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048506	0.89[ASN][1000 genomes]
rs6076006	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7343262	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23008800	Weak transcription	Lung	lung
2	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:23005400-23010800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:23005800-23010200	Enhancers	Primary hematopoietic stem cells	blood
5	chr20:23005800-23010600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr20:23006000-23010600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr20:23006000-23010600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:23006200-23009000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr20:23006200-23010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr20:23007400-23008600	Active TSS	Primary B cells from cord blood	blood
11	chr20:23008000-23009200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr20:23008200-23008400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr20:23008200-23009200	Enhancers	Placenta	Placenta
14	chr20:23008200-23010400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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