Variant report

Variant	rs7343262
Chromosome Location	chr20:23018749-23018750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11696756	0.80[AMR][1000 genomes]
rs11697609	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697803	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11698496	0.84[ASN][1000 genomes]
rs6048506	0.89[ASN][1000 genomes]
rs6076006	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23019200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:23016200-23019600	Enhancers	Dnd41	blood
4	chr20:23016200-23020600	Weak transcription	Right Atrium	heart
5	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
6	chr20:23016600-23023600	Weak transcription	Gastric	stomach
7	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
8	chr20:23017800-23020800	Weak transcription	Esophagus	oesophagus
9	chr20:23018000-23019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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