Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THBD-1	chr20:22989738-22990906	XLOC_013687

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11696756	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11697609	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11697803	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6048506	0.95[ASN][1000 genomes]
rs6076006	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7343262	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22988400-22993400	Weak transcription	Aorta	Aorta
2	chr20:22988400-22995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:22988800-22990400	Enhancers	NHDF-Ad	bronchial
4	chr20:22988800-22992000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:22989400-22991000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:22990200-22990800	Enhancers	Primary hematopoietic stem cells	blood
7	chr20:22990200-22990800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr20:22990200-22990800	Flanking Active TSS	A549	lung
9	chr20:22990200-22990800	Enhancers	HSMM	muscle
10	chr20:22990200-22990800	Enhancers	NHEK	skin
11	chr20:22990200-22991000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:22990200-22991000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr20:22990200-22991000	Enhancers	Gastric	stomach
14	chr20:22990200-22991000	Enhancers	Right Ventricle	heart
15	chr20:22990200-22991000	Enhancers	Stomach Mucosa	stomach
16	chr20:22990200-22991000	Enhancers	HSMMtube	muscle
17	chr20:22990200-22991200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr20:22990200-22991200	Enhancers	Lung	lung
19	chr20:22990200-22991200	Enhancers	HMEC	breast
20	chr20:22990200-22992400	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search: