Variant report

Variant	rs11698317
Chromosome Location	chr20:15428111-15428112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11087135	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11696247	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs11698123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12481556	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs13036384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13039585	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs17678835	0.93[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2208134	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs379166	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs429535	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs60443504	1.00[ASN][1000 genomes]
rs6074891	0.82[YRI][hapmap]
rs6079804	0.82[YRI][hapmap]
rs6079809	0.82[YRI][hapmap]
rs6079810	0.82[YRI][hapmap]
rs6105410	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6105411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6110597	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6110599	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs6110602	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6110603	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6110605	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs7268071	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs927919	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15426200-15428200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr20:15426200-15428200	Enhancers	HMEC	breast
3	chr20:15426200-15428600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:15426400-15428600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:15426800-15428800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr20:15427000-15428200	Enhancers	Stomach Smooth Muscle	stomach
7	chr20:15427200-15428200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:15427400-15431400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr20:15427600-15428400	Enhancers	Fetal Kidney	kidney
10	chr20:15427600-15429000	Enhancers	Pancreas	Pancrea
11	chr20:15427800-15428200	Enhancers	Fetal Muscle Leg	muscle
12	chr20:15427800-15428200	Enhancers	Placenta	Placenta

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