Variant report
Variant | rs6110605 |
---|---|
Chromosome Location | chr20:15416394-15416395 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11087135 | 0.93[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap] |
rs11696247 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs11698123 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs11698317 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12481556 | 0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes] |
rs13036384 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs13039585 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs17678835 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[TSI][hapmap];0.90[ASN][1000 genomes] |
rs2208134 | 1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs379166 | 0.93[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap] |
rs429535 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs60443504 | 0.96[ASN][1000 genomes] |
rs6105410 | 0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs6105411 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs6110597 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs6110599 | 0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap] |
rs6110602 | 0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap] |
rs6110603 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap] |
rs7268071 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3442273 | chr20:15412852-15416450 | Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |