Variant report
Variant | rs11699117 |
---|---|
Chromosome Location | chr20:14070869-14070870 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11087071 | 1.00[CEU][hapmap] |
rs11698906 | 1.00[CEU][hapmap] |
rs11699040 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12373859 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs2018662 | 0.86[AFR][1000 genomes] |
rs2038674 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs2209019 | 1.00[CEU][hapmap] |
rs3940133 | 0.81[EUR][1000 genomes] |
rs4380310 | 1.00[YRI][hapmap] |
rs4814288 | 1.00[CEU][hapmap] |
rs59177302 | 0.81[EUR][1000 genomes] |
rs6033884 | 1.00[CEU][hapmap] |
rs6033888 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042525 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042530 | 1.00[CEU][hapmap] |
rs6042541 | 1.00[CEU][hapmap] |
rs6042548 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042552 | 0.81[EUR][1000 genomes] |
rs6105221 | 1.00[CEU][hapmap] |
rs7260702 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7261715 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7261965 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs7264001 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7264152 | 1.00[YRI][hapmap] |
rs73255080 | 0.81[EUR][1000 genomes] |
rs73264804 | 0.82[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs73269439 | 0.81[EUR][1000 genomes] |
rs8118198 | 0.81[EUR][1000 genomes] |
rs8122275 | 0.82[CEU][hapmap];1.00[YRI][hapmap] |
rs8125682 | 1.00[YRI][hapmap] |
rs979409 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv912689 | chr20:13570331-14155881 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
3 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv585438 | chr20:14054163-14171905 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14066000-14074400 | Weak transcription | Ovary | ovary |