Variant report
Variant | rs7261715 |
---|---|
Chromosome Location | chr20:14191071-14191072 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11087071 | 1.00[CEU][hapmap] |
rs11698906 | 1.00[CEU][hapmap] |
rs11699040 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs11699117 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12373859 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs1555412 | 1.00[YRI][hapmap] |
rs2018662 | 0.86[AFR][1000 genomes] |
rs2038674 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs2209019 | 1.00[CEU][hapmap] |
rs3940133 | 0.81[EUR][1000 genomes] |
rs4380310 | 1.00[YRI][hapmap] |
rs4814288 | 1.00[CEU][hapmap] |
rs59177302 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6033884 | 1.00[CEU][hapmap] |
rs6033888 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042525 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042530 | 1.00[CEU][hapmap] |
rs6042541 | 1.00[CEU][hapmap] |
rs6042548 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6042552 | 0.81[EUR][1000 genomes] |
rs6079397 | 1.00[YRI][hapmap] |
rs6105221 | 1.00[CEU][hapmap] |
rs7260702 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7261965 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7264001 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7264152 | 1.00[YRI][hapmap] |
rs73255080 | 0.81[EUR][1000 genomes] |
rs73264804 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs73269439 | 0.81[EUR][1000 genomes] |
rs8118198 | 0.81[EUR][1000 genomes] |
rs8120693 | 1.00[YRI][hapmap] |
rs8122275 | 0.82[CEU][hapmap];1.00[YRI][hapmap] |
rs8125682 | 1.00[YRI][hapmap] |
rs979409 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv458872 | chr20:14189779-14317390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470540 | chr20:14189779-14317390 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv585439 | chr20:14189779-14317390 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14189200-14191600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
2 | chr20:14190400-14191600 | Enhancers | Rectal Mucosa Donor 29 | rectum |
3 | chr20:14190400-14194600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr20:14191000-14191400 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |