Variant report

Variant	rs8122275
Chromosome Location	chr20:14077625-14077626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11087071	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11696983	1.00[JPT][hapmap]
rs11697008	1.00[JPT][hapmap]
rs11698906	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11699040	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11699117	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12373859	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2018662	0.86[AFR][1000 genomes]
rs2038674	0.82[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209017	1.00[JPT][hapmap]
rs2209019	1.00[JPT][hapmap]
rs2327818	1.00[JPT][hapmap]
rs2327819	1.00[JPT][hapmap]
rs3940133	1.00[EUR][1000 genomes]
rs4120825	1.00[JPT][hapmap]
rs4380310	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4814288	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4814289	1.00[JPT][hapmap]
rs4814290	1.00[JPT][hapmap]
rs59177302	1.00[EUR][1000 genomes]
rs6033852	1.00[JPT][hapmap]
rs6033884	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6033888	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033897	1.00[JPT][hapmap]
rs6042525	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042530	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6042541	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6042548	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042552	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042553	1.00[JPT][hapmap]
rs6074697	1.00[JPT][hapmap]
rs6079309	1.00[JPT][hapmap]
rs6079346	1.00[JPT][hapmap]
rs6079350	1.00[JPT][hapmap]
rs6079353	1.00[JPT][hapmap]
rs6105221	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6105227	1.00[JPT][hapmap]
rs6110194	1.00[JPT][hapmap]
rs7260702	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7261715	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7261965	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7264001	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7264152	1.00[YRI][hapmap]
rs7273854	1.00[JPT][hapmap]
rs73255018	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73255080	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264804	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73269439	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8118198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8125682	1.00[YRI][hapmap]
rs9753755	0.86[EUR][1000 genomes]
rs979409	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv585438	chr20:14054163-14171905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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