Variant report

Variant	rs11705292
Chromosome Location	chr22:32056486-32056487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32053085-32061138..22:32150875-32154575	GM12878	blood:
2	22:32053085-32061138..22:32284948-32287956	Hela-S3	cervix:
3	chr22:32022238..32024391-chr22:32055761..32058273,2	MCF-7	breast:
4	22:32053085-32061138..22:32347255-32351014	GM12878	blood:
5	chr22:32056284..32058646-chr22:32144248..32146954,2	MCF-7	breast:
6	chr22:32054689..32061174-chr22:32339137..32344183,9	K562	blood:
7	22:31936958-31958600..22:32053085-32061138	Hela-S3	cervix:
8	chr22:32049112..32050830-chr22:32055861..32057960,2	MCF-7	breast:
9	chr22:32022870..32025746-chr22:32055333..32057632,2	K562	blood:
10	chr22:32055976..32060358-chr22:32339389..32343294,9	K562	blood:
11	chr22:32026032..32028190-chr22:32055546..32059195,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183530	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs5994419	0.82[ASN][1000 genomes]
rs5998069	0.85[ASN][1000 genomes]
rs5998074	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs5998078	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830290	chr22:32011225-32057964	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32041600-32057400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32042800-32057000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr22:32043000-32057000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:32043800-32056600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:32044000-32056800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr22:32044200-32057000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr22:32044200-32057000	Weak transcription	Fetal Kidney	kidney
8	chr22:32044400-32057000	Weak transcription	HSMMtube	muscle
9	chr22:32044600-32056600	Weak transcription	HUVEC	blood vessel
10	chr22:32045000-32057200	Weak transcription	Thymus	Thymus
11	chr22:32045200-32057000	Weak transcription	Colon Smooth Muscle	Colon
12	chr22:32045200-32057200	Weak transcription	Aorta	Aorta
13	chr22:32045400-32056600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr22:32045400-32057000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr22:32045400-32057000	Weak transcription	Fetal Lung	lung
16	chr22:32045600-32057000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr22:32046000-32056600	Weak transcription	Primary B cells from cord blood	blood
18	chr22:32046000-32057000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr22:32046000-32057200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:32046200-32056600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr22:32046200-32056800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr22:32046200-32057000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr22:32046400-32056600	Weak transcription	Small Intestine	intestine
24	chr22:32046400-32057000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:32046600-32057200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr22:32046800-32056800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr22:32046800-32056800	Weak transcription	Fetal Brain Female	brain
28	chr22:32046800-32057000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:32046800-32057000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr22:32046800-32057000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr22:32047400-32057000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr22:32049600-32056800	Weak transcription	Brain Anterior Caudate	brain
33	chr22:32049800-32056600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr22:32050000-32057400	Weak transcription	Right Atrium	heart
35	chr22:32050200-32057000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr22:32050200-32057200	Weak transcription	Brain Substantia Nigra	brain
37	chr22:32050400-32056800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr22:32050600-32057000	Weak transcription	Brain Angular Gyrus	brain
39	chr22:32050600-32057000	Weak transcription	A549	lung
40	chr22:32050800-32056800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr22:32050800-32056800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr22:32050800-32056800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr22:32050800-32057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr22:32050800-32057000	Weak transcription	K562	blood
45	chr22:32052800-32057000	Weak transcription	Fetal Stomach	stomach
46	chr22:32054000-32056800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr22:32054200-32057400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr22:32055000-32057000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr22:32055000-32057000	Enhancers	Placenta	Placenta
50	chr22:32055200-32056800	Flanking Active TSS	NHEK	skin

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