Variant report

Variant	rs5998078
Chromosome Location	chr22:32069186-32069187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1076674	0.81[AMR][1000 genomes]
rs11089522	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11702881	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11705292	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12166848	0.81[AMR][1000 genomes]
rs131221	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs131231	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5994419	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998069	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5998074	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5998080	0.81[AMR][1000 genomes]
rs60209974	0.82[AMR][1000 genomes]
rs60669705	0.81[AMR][1000 genomes]
rs62239187	0.81[AMR][1000 genomes]
rs8136047	0.81[AMR][1000 genomes]
rs9619222	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9621316	0.81[AMR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32058800-32072400	Weak transcription	Fetal Heart	heart
2	chr22:32059000-32070000	Weak transcription	Primary B cells from cord blood	blood
3	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr22:32067000-32072400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr22:32067000-32072600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr22:32067400-32078800	Weak transcription	HepG2	liver
8	chr22:32067600-32072400	Weak transcription	Placenta	Placenta
9	chr22:32067800-32072400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:32068000-32069400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr22:32068200-32069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
13	chr22:32068800-32069200	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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