Variant report

Variant	rs1076674
Chromosome Location	chr22:32069433-32069434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32056382..32058411-chr22:32067982..32070829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1013703	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.80[ASN][1000 genomes]
rs11703040	1.00[CHB][hapmap]
rs11703079	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[AMR][1000 genomes]
rs11703102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11703104	1.00[CHB][hapmap]
rs11703232	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs11703275	1.00[CHB][hapmap]
rs11703798	0.82[AMR][1000 genomes]
rs11704129	1.00[CHB][hapmap]
rs11704362	0.80[ASN][1000 genomes]
rs11705235	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs11705329	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12157427	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12158002	1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs12159673	1.00[CHB][hapmap]
rs12160120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12160737	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166848	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs131222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131224	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131226	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs131228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131231	0.92[MEX][hapmap]
rs131235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131241	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131243	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131246	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131251	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131252	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131254	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs140083	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140085	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16989291	1.00[MEX][hapmap]
rs16989374	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs16989529	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs16989540	0.84[MEX][hapmap]
rs2040981	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs2051583	0.84[MEX][hapmap]
rs2413054	0.85[MEX][hapmap]
rs2413058	0.80[ASN][1000 genomes]
rs28374732	0.84[AMR][1000 genomes]
rs3804088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603881	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56406828	0.86[AMR][1000 genomes]
rs5753682	0.85[MEX][hapmap]
rs5753753	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994417	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs5994424	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5994436	0.88[GIH][hapmap]
rs5998063	0.81[AMR][1000 genomes]
rs5998064	0.82[AMR][1000 genomes]
rs5998065	0.84[AMR][1000 genomes]
rs5998066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998070	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998071	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998074	0.92[MEX][hapmap]
rs5998078	0.81[AMR][1000 genomes]
rs5998079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998081	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998082	0.88[AMR][1000 genomes]
rs5998084	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998089	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998093	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998095	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998103	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998113	0.80[ASN][1000 genomes]
rs5998114	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.80[ASN][1000 genomes]
rs5998115	0.84[MEX][hapmap]
rs5998116	0.80[ASN][1000 genomes]
rs5998133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs5998134	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs5998135	1.00[CHB][hapmap]
rs5998144	0.84[MEX][hapmap]
rs60209974	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61273982	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239167	0.88[AMR][1000 genomes]
rs62239185	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62239186	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239188	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240515	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62240684	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240687	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7289259	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73162139	0.80[ASN][1000 genomes]
rs740227	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8136047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8141719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8143084	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs81946	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9619221	0.88[AMR][1000 genomes]
rs9619222	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621307	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9621316	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32058800-32072400	Weak transcription	Fetal Heart	heart
2	chr22:32059000-32070000	Weak transcription	Primary B cells from cord blood	blood
3	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr22:32067000-32072400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr22:32067000-32072600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr22:32067400-32078800	Weak transcription	HepG2	liver
8	chr22:32067600-32072400	Weak transcription	Placenta	Placenta
9	chr22:32067800-32072400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:32068200-32069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
12	chr22:32069200-32071200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr22:32069400-32069800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr22:32069400-32071000	Enhancers	Primary B cells from peripheral blood	blood

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