Variant report

Variant	rs4603881
Chromosome Location	chr22:32141188-32141189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32137554-32145079..22:32338420-32342898	Hela-S3	cervix:
2	chr22:32140385..32142367-chr22:32144788..32146903,2	K562	blood:
3	chr22:32139936..32144184-chr22:32144541..32149904,8	MCF-7	breast:
4	22:32137554-32145079..22:32860159-32865649	Hela-S3	cervix:
5	22:32012966-32043914..22:32137554-32145079	Hela-S3	cervix:
6	22:32137554-32145079..22:33452523-33459358	Hela-S3	cervix:
7	22:32137554-32145079..22:32544939-32549151	Hela-S3	cervix:
8	22:32137554-32145079..22:32292186-32294405	Hela-S3	cervix:
9	22:32053085-32061138..22:32137554-32145079	GM12878	blood:
10	chr22:32137877..32142540-chr22:32142846..32147068,6	MCF-7	breast:
11	22:32137554-32145079..22:32764253-32784733	K562	blood:
12	22:32137554-32145079..22:32868055-32872511	GM12878	blood:
13	22:32137554-32145079..22:32162110-32166713	GM12878	blood:
14	22:31836635-31847259..22:32137554-32145079	Hela-S3	cervix:
15	22:32137554-32145079..22:32750950-32761732	Hela-S3	cervix:
16	22:32096851-32100847..22:32137554-32145079	Hela-S3	cervix:
17	22:32137554-32145079..22:33262063-33266567	Hela-S3	cervix:
18	22:32102727-32109893..22:32137554-32145079	Hela-S3	cervix:
19	22:32137554-32145079..22:32342898-32343477	GM12878	blood:
20	22:31803954-31807204..22:32137554-32145079	Hela-S3	cervix:
21	22:32137554-32145079..22:32264718-32278135	Hela-S3	cervix:
22	22:32137554-32145079..22:33190123-33206921	Hela-S3	cervix:
23	22:32137554-32145079..22:32802848-32805157	GM12878	blood:
24	22:31864703-31891033..22:32137554-32145079	K562	blood:
25	22:32137554-32145079..22:32170492-32188129	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000205856	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000100220	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000100234	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000128276	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1013703	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076674	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11089530	0.93[ASN][1000 genomes]
rs11703040	0.93[ASN][1000 genomes]
rs11703104	0.93[ASN][1000 genomes]
rs11703232	0.93[ASN][1000 genomes]
rs11703275	0.93[ASN][1000 genomes]
rs11703810	0.93[ASN][1000 genomes]
rs11703854	0.93[ASN][1000 genomes]
rs11704362	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704377	0.93[ASN][1000 genomes]
rs11705097	0.93[ASN][1000 genomes]
rs11705329	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12157427	0.80[ASN][1000 genomes]
rs12157989	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12159673	0.93[ASN][1000 genomes]
rs12160120	0.93[ASN][1000 genomes]
rs12160737	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12166848	0.80[ASN][1000 genomes]
rs131222	0.93[ASN][1000 genomes]
rs131224	0.93[ASN][1000 genomes]
rs131226	0.93[ASN][1000 genomes]
rs131228	0.93[ASN][1000 genomes]
rs131235	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131237	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131241	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131243	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131246	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140079	0.93[ASN][1000 genomes]
rs140083	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140085	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989529	0.93[ASN][1000 genomes]
rs2040981	0.87[ASN][1000 genomes]
rs2413058	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804088	0.80[ASN][1000 genomes]
rs55645350	0.93[ASN][1000 genomes]
rs55699591	0.93[ASN][1000 genomes]
rs5753753	0.80[ASN][1000 genomes]
rs5994424	0.93[ASN][1000 genomes]
rs5998079	0.80[ASN][1000 genomes]
rs5998080	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998081	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998084	0.80[ASN][1000 genomes]
rs5998085	0.80[AMR][1000 genomes]
rs5998089	0.80[ASN][1000 genomes]
rs5998091	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998093	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998095	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998098	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998099	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998103	0.93[ASN][1000 genomes]
rs5998113	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998114	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5998115	0.81[AFR][1000 genomes]
rs5998116	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998123	0.93[ASN][1000 genomes]
rs5998133	0.93[ASN][1000 genomes]
rs5998134	0.93[ASN][1000 genomes]
rs5998135	0.93[ASN][1000 genomes]
rs60136719	0.93[ASN][1000 genomes]
rs60209974	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60669705	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61273982	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238893	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62238895	0.93[ASN][1000 genomes]
rs62238904	0.93[ASN][1000 genomes]
rs62238906	0.93[ASN][1000 genomes]
rs62239186	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239187	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239188	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62240515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240684	0.93[ASN][1000 genomes]
rs62240686	0.93[ASN][1000 genomes]
rs62240687	0.93[ASN][1000 genomes]
rs7289259	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7289535	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7291898	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73162139	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740227	0.93[ASN][1000 genomes]
rs8136047	0.80[ASN][1000 genomes]
rs8141719	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8143084	0.80[ASN][1000 genomes]
rs81946	0.93[ASN][1000 genomes]
rs9619222	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9619224	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9621316	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32112200-32142000	Weak transcription	Hela-S3	cervix
2	chr22:32112200-32145000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32113400-32143800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32113600-32142000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:32121000-32144000	Weak transcription	Fetal Kidney	kidney
6	chr22:32121200-32143600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr22:32121200-32143600	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:32121400-32143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr22:32121600-32144000	Weak transcription	Brain Anterior Caudate	brain
10	chr22:32121600-32144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr22:32121600-32144400	Weak transcription	HSMMtube	muscle
12	chr22:32121600-32144600	Weak transcription	Fetal Brain Male	brain
13	chr22:32123200-32144600	Weak transcription	Psoas Muscle	Psoas
14	chr22:32123200-32144800	Weak transcription	Right Ventricle	heart
15	chr22:32124200-32144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:32124200-32144600	Weak transcription	Spleen	Spleen
17	chr22:32125200-32143400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr22:32125200-32143800	Weak transcription	Brain Substantia Nigra	brain
19	chr22:32125200-32144600	Weak transcription	Brain Angular Gyrus	brain
20	chr22:32128600-32143600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr22:32128800-32144200	Weak transcription	Small Intestine	intestine
22	chr22:32129200-32143800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr22:32129200-32145200	Weak transcription	Gastric	stomach
24	chr22:32130600-32143600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr22:32130800-32143200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr22:32130800-32145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr22:32131000-32143800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr22:32131000-32144000	Weak transcription	NHLF	lung
29	chr22:32131800-32143800	Weak transcription	Fetal Heart	heart
30	chr22:32132400-32142800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr22:32132400-32143800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr22:32132400-32144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr22:32132600-32143800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr22:32132800-32144800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:32133000-32143600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr22:32134600-32143400	Weak transcription	NHDF-Ad	bronchial
37	chr22:32134800-32142200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr22:32134800-32142200	Strong transcription	Fetal Thymus	thymus
39	chr22:32134800-32143800	Weak transcription	Fetal Lung	lung
40	chr22:32134800-32144200	Weak transcription	Colonic Mucosa	Colon
41	chr22:32134800-32144200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr22:32134800-32144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr22:32134800-32144600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr22:32134800-32144600	Weak transcription	Ovary	ovary
45	chr22:32134800-32144600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr22:32134800-32144800	Weak transcription	Right Atrium	heart
47	chr22:32134800-32145200	Weak transcription	Esophagus	oesophagus
48	chr22:32134800-32145200	Weak transcription	Left Ventricle	heart
49	chr22:32134800-32145200	Weak transcription	Lung	lung
50	chr22:32135000-32143600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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