Variant report

Variant	rs55699591
Chromosome Location	chr22:32207203-32207204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31936958-31958600..22:32188129-32210582	K562	blood:
2	22:32188129-32210582..22:32846948-32860159	K562	blood:
3	chr22:32205600..32207508-chr22:32210760..32213502,2	K562	blood:
4	chr22:32205436..32207508-chr22:32210760..32212655,2	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction
ENSG00000236132	Chromatin interaction
ENSG00000214093	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1013703	0.93[ASN][1000 genomes]
rs11089530	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11089531	0.92[AMR][1000 genomes]
rs11703040	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703104	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703232	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703275	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703810	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703854	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704362	0.93[ASN][1000 genomes]
rs11704377	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705097	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705329	0.93[ASN][1000 genomes]
rs12157989	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12159673	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160120	0.87[ASN][1000 genomes]
rs131222	0.87[ASN][1000 genomes]
rs131224	0.87[ASN][1000 genomes]
rs131226	0.87[ASN][1000 genomes]
rs131228	0.87[ASN][1000 genomes]
rs131235	0.87[ASN][1000 genomes]
rs131237	0.87[ASN][1000 genomes]
rs131241	0.93[ASN][1000 genomes]
rs131243	0.93[ASN][1000 genomes]
rs131246	0.93[ASN][1000 genomes]
rs131251	0.93[ASN][1000 genomes]
rs131252	0.93[ASN][1000 genomes]
rs131254	0.93[ASN][1000 genomes]
rs140079	0.87[ASN][1000 genomes]
rs140083	0.93[ASN][1000 genomes]
rs140085	0.93[ASN][1000 genomes]
rs16989529	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040981	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413058	0.93[ASN][1000 genomes]
rs4603881	0.93[ASN][1000 genomes]
rs55645350	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994424	0.87[ASN][1000 genomes]
rs5994435	0.92[AMR][1000 genomes]
rs5994436	0.94[AMR][1000 genomes]
rs5998093	0.87[ASN][1000 genomes]
rs5998095	0.87[ASN][1000 genomes]
rs5998098	0.87[ASN][1000 genomes]
rs5998099	0.87[ASN][1000 genomes]
rs5998103	0.87[ASN][1000 genomes]
rs5998113	0.93[ASN][1000 genomes]
rs5998114	0.93[ASN][1000 genomes]
rs5998116	0.93[ASN][1000 genomes]
rs5998123	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998133	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998134	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998135	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998161	0.82[AMR][1000 genomes]
rs60136719	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.87[ASN][1000 genomes]
rs61273982	0.93[ASN][1000 genomes]
rs62238893	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238895	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238904	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238906	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238934	0.86[AMR][1000 genomes]
rs62240515	0.93[ASN][1000 genomes]
rs62240684	0.87[ASN][1000 genomes]
rs62240686	0.87[ASN][1000 genomes]
rs62240687	0.87[ASN][1000 genomes]
rs7289259	0.93[ASN][1000 genomes]
rs7289535	0.81[ASN][1000 genomes]
rs7289702	0.86[AMR][1000 genomes]
rs7291898	1.00[ASN][1000 genomes]
rs73162139	0.93[ASN][1000 genomes]
rs740227	0.87[ASN][1000 genomes]
rs8141719	0.87[ASN][1000 genomes]
rs81946	0.87[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr22:32175200-32213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr22:32182200-32209800	Strong transcription	Fetal Stomach	stomach
9	chr22:32187800-32222000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:32188000-32220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr22:32188600-32222600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr22:32188800-32210200	Strong transcription	Fetal Intestine Small	intestine
13	chr22:32188800-32214200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr22:32189800-32225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr22:32191600-32207800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr22:32191800-32208000	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr22:32192200-32209600	Strong transcription	Fetal Intestine Large	intestine
19	chr22:32192400-32208200	Strong transcription	Primary T cells from cord blood	blood
20	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr22:32192800-32220000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr22:32193000-32207800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr22:32193000-32208600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr22:32193200-32207800	Strong transcription	Lung	lung
28	chr22:32193200-32208000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr22:32193200-32208000	Strong transcription	Dnd41	blood
30	chr22:32193200-32208200	Strong transcription	Fetal Brain Female	brain
31	chr22:32193200-32208400	Strong transcription	Thymus	Thymus
32	chr22:32193200-32208600	Strong transcription	Liver	Liver
33	chr22:32193200-32209400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr22:32193200-32226800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr22:32193200-32228400	Strong transcription	Adipose Nuclei	Adipose
36	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr22:32193400-32208000	Strong transcription	Ovary	ovary
39	chr22:32193400-32220200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr22:32196200-32208200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr22:32196600-32210800	Weak transcription	NHLF	lung
42	chr22:32196600-32224800	Weak transcription	Hela-S3	cervix
43	chr22:32197200-32214400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
45	chr22:32197400-32219800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr22:32197800-32207800	Weak transcription	Psoas Muscle	Psoas
47	chr22:32198000-32209200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr22:32198600-32208200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr22:32199000-32209200	Weak transcription	Stomach Mucosa	stomach
50	chr22:32199000-32213600	Weak transcription	K562	blood

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