Variant report

Variant	rs5998093
Chromosome Location	chr22:32092981-32092982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1013703	0.93[ASN][1000 genomes]
rs1076674	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11089530	0.87[ASN][1000 genomes]
rs11703040	0.87[ASN][1000 genomes]
rs11703079	0.83[AMR][1000 genomes]
rs11703102	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11703104	0.87[ASN][1000 genomes]
rs11703232	0.87[ASN][1000 genomes]
rs11703275	0.87[ASN][1000 genomes]
rs11703798	0.87[AMR][1000 genomes]
rs11703810	0.87[ASN][1000 genomes]
rs11703854	0.87[ASN][1000 genomes]
rs11704362	0.93[ASN][1000 genomes]
rs11704377	0.87[ASN][1000 genomes]
rs11705097	0.87[ASN][1000 genomes]
rs11705329	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12157427	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12157989	0.87[ASN][1000 genomes]
rs12158002	0.83[AMR][1000 genomes]
rs12159673	0.87[ASN][1000 genomes]
rs12160120	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160737	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12166848	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs131222	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131224	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131226	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs131228	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131235	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131237	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131241	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131243	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131246	0.93[ASN][1000 genomes]
rs131251	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131252	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131254	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs140079	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140083	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs140085	0.93[ASN][1000 genomes]
rs16989374	0.87[AMR][1000 genomes]
rs16989529	0.87[ASN][1000 genomes]
rs2040981	0.81[ASN][1000 genomes]
rs2413058	0.93[ASN][1000 genomes]
rs28374732	0.89[AMR][1000 genomes]
rs3804088	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4603881	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55645350	0.87[ASN][1000 genomes]
rs55699591	0.87[ASN][1000 genomes]
rs56406828	0.83[AMR][1000 genomes]
rs5753753	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5994417	0.87[AMR][1000 genomes]
rs5994424	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998064	0.87[AMR][1000 genomes]
rs5998065	0.82[AMR][1000 genomes]
rs5998066	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998068	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998070	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998071	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998079	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998080	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998081	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998082	0.94[AMR][1000 genomes]
rs5998084	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998085	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5998089	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998095	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998098	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998099	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998103	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998113	0.93[ASN][1000 genomes]
rs5998114	0.93[ASN][1000 genomes]
rs5998116	0.93[ASN][1000 genomes]
rs5998123	0.87[ASN][1000 genomes]
rs5998133	0.87[ASN][1000 genomes]
rs5998134	0.87[ASN][1000 genomes]
rs5998135	0.87[ASN][1000 genomes]
rs60136719	0.87[ASN][1000 genomes]
rs60209974	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60669705	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61273982	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62238893	0.87[ASN][1000 genomes]
rs62238895	0.87[ASN][1000 genomes]
rs62238904	0.87[ASN][1000 genomes]
rs62238906	0.87[ASN][1000 genomes]
rs62239167	0.86[AMR][1000 genomes]
rs62239185	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239186	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62239187	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62239188	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240515	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62240684	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240686	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7289259	0.93[ASN][1000 genomes]
rs7289535	0.81[ASN][1000 genomes]
rs7291898	0.87[ASN][1000 genomes]
rs73162139	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs740227	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8136047	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8141719	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8143084	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs81946	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619221	0.82[AMR][1000 genomes]
rs9619222	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9619224	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9621307	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9621316	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr22:32074400-32100400	Weak transcription	K562	blood
4	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
6	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
8	chr22:32078200-32093200	Strong transcription	Fetal Intestine Large	intestine
9	chr22:32078400-32093800	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr22:32078400-32101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32078400-32101200	Strong transcription	Placenta	Placenta
12	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
13	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
14	chr22:32078800-32094200	Strong transcription	Liver	Liver
15	chr22:32078800-32094200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr22:32079000-32099000	Weak transcription	Small Intestine	intestine
20	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr22:32080400-32101600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
24	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
25	chr22:32082000-32093400	Weak transcription	Esophagus	oesophagus
26	chr22:32082800-32097200	Weak transcription	Right Ventricle	heart
27	chr22:32083000-32096200	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:32086400-32093600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr22:32086400-32101000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr22:32086400-32101200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr22:32087000-32101200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr22:32087000-32101200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr22:32087200-32101200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr22:32087200-32101200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr22:32087200-32101200	Strong transcription	Dnd41	blood
36	chr22:32087400-32094400	Strong transcription	Fetal Lung	lung
37	chr22:32087400-32094800	Strong transcription	Primary T cells from cord blood	blood
38	chr22:32087400-32101000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr22:32087400-32101200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr22:32087400-32101200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr22:32087400-32101200	Strong transcription	Fetal Muscle Leg	muscle
42	chr22:32087400-32101800	Strong transcription	Fetal Thymus	thymus
43	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr22:32088000-32093200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr22:32088000-32094000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr22:32088000-32101000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr22:32088400-32094000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr22:32088400-32101200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr22:32088600-32093400	Strong transcription	Brain Hippocampus Middle	brain
50	chr22:32088600-32101600	Strong transcription	H1 Cell Line	embryonic stem cell

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