Variant report

Variant	rs62239167
Chromosome Location	chr22:32041644-32041645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32347255-32351014	K562	blood:
2	22:31936958-31958600..22:32012966-32043914	GM12878	blood:
3	chr22:32041168..32045614-chr22:32055759..32058889,4	MCF-7	breast:
4	chr22:32026042..32027602-chr22:32041118..32042734,2	MCF-7	breast:
5	22:32012966-32043914..22:32513817-32522138	K562	blood:
6	22:31829733-31836635..22:32012966-32043914	GM12878	blood:
7	22:32012966-32043914..22:32665993-32670527	K562	blood:
8	chr22:31891416..31894088-chr22:32041423..32044046,2	MCF-7	breast:
9	22:31930706-31935473..22:32012966-32043914	GM12878	blood:
10	22:32012966-32043914..22:32529813-32538538	K562	blood:
11	22:32012966-32043914..22:32846948-32860159	K562	blood:
12	22:32012966-32043914..22:32360288-32405313	K562	blood:

No data

Variant related genes	Relation type
ENSG00000230866	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000232707	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000224050	Chromatin interaction
ENSG00000229169	Chromatin interaction
ENSG00000234479	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000239674	Chromatin interaction
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1076674	0.88[AMR][1000 genomes]
rs11703079	0.94[AMR][1000 genomes]
rs11703102	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11703798	0.90[AMR][1000 genomes]
rs12157427	0.88[AMR][1000 genomes]
rs12158002	0.94[AMR][1000 genomes]
rs12160120	0.86[AMR][1000 genomes]
rs12160737	0.88[AMR][1000 genomes]
rs12166848	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs131222	0.86[AMR][1000 genomes]
rs131224	0.86[AMR][1000 genomes]
rs131226	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs131228	0.84[AMR][1000 genomes]
rs131235	0.88[AMR][1000 genomes]
rs131237	0.88[AMR][1000 genomes]
rs140079	0.86[AMR][1000 genomes]
rs16989374	0.90[AMR][1000 genomes]
rs3804088	0.88[AMR][1000 genomes]
rs56406828	0.94[AMR][1000 genomes]
rs5753753	0.88[AMR][1000 genomes]
rs5994417	0.90[AMR][1000 genomes]
rs5994424	0.84[AMR][1000 genomes]
rs5998063	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5998064	0.90[AMR][1000 genomes]
rs5998065	0.92[AMR][1000 genomes]
rs5998066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5998068	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5998070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5998071	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5998079	0.88[AMR][1000 genomes]
rs5998080	0.88[AMR][1000 genomes]
rs5998081	0.88[AMR][1000 genomes]
rs5998082	0.84[AMR][1000 genomes]
rs5998084	0.88[AMR][1000 genomes]
rs5998085	0.86[AMR][1000 genomes]
rs5998089	0.88[AMR][1000 genomes]
rs5998091	0.86[AMR][1000 genomes]
rs5998093	0.86[AMR][1000 genomes]
rs5998095	0.88[AMR][1000 genomes]
rs5998098	0.90[AMR][1000 genomes]
rs5998099	0.90[AMR][1000 genomes]
rs5998103	0.82[AMR][1000 genomes]
rs60209974	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60669705	0.88[AMR][1000 genomes]
rs62239185	0.84[AMR][1000 genomes]
rs62239186	0.88[AMR][1000 genomes]
rs62239187	0.88[AMR][1000 genomes]
rs62239188	0.90[AMR][1000 genomes]
rs62240684	0.88[AMR][1000 genomes]
rs62240686	0.84[AMR][1000 genomes]
rs62240687	0.84[AMR][1000 genomes]
rs740227	0.84[AMR][1000 genomes]
rs8136047	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8141719	0.88[AMR][1000 genomes]
rs8143084	0.88[AMR][1000 genomes]
rs81946	0.84[AMR][1000 genomes]
rs9619221	0.92[AMR][1000 genomes]
rs9619222	0.88[AMR][1000 genomes]
rs9619224	0.90[AMR][1000 genomes]
rs9621307	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9621316	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830290	chr22:32011225-32057964	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32027200-32042400	Weak transcription	A549	lung
2	chr22:32027200-32042600	Weak transcription	Thymus	Thymus
3	chr22:32027200-32043400	Weak transcription	Aorta	Aorta
4	chr22:32027400-32042200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr22:32027400-32042800	Weak transcription	Fetal Lung	lung
6	chr22:32027600-32042000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr22:32027600-32042000	Weak transcription	NH-A	brain
8	chr22:32027600-32042200	Weak transcription	Brain Germinal Matrix	brain
9	chr22:32027600-32043200	Weak transcription	HSMMtube	muscle
10	chr22:32027600-32044800	Weak transcription	Small Intestine	intestine
11	chr22:32027800-32042000	Weak transcription	HSMM	muscle
12	chr22:32027800-32042200	Weak transcription	Fetal Brain Male	brain
13	chr22:32027800-32042200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr22:32027800-32042400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr22:32027800-32042600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr22:32027800-32042600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr22:32027800-32042800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr22:32027800-32043200	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:32027800-32043800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr22:32028000-32043200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr22:32028400-32043200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr22:32032200-32041800	Weak transcription	HMEC	breast
23	chr22:32032200-32046000	Weak transcription	Pancreas	Pancrea
24	chr22:32033400-32042000	Strong transcription	Fetal Intestine Small	intestine
25	chr22:32033800-32042800	Weak transcription	Brain Substantia Nigra	brain
26	chr22:32034000-32042000	Weak transcription	K562	blood
27	chr22:32034200-32042600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr22:32034400-32042000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr22:32034400-32042200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr22:32034400-32042600	Weak transcription	Brain Angular Gyrus	brain
31	chr22:32034400-32043000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr22:32034400-32043200	Weak transcription	Gastric	stomach
33	chr22:32034400-32043600	Weak transcription	Right Ventricle	heart
34	chr22:32034400-32056400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:32034600-32042000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr22:32034600-32042200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr22:32034600-32042400	Weak transcription	Fetal Heart	heart
38	chr22:32035000-32042000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr22:32035000-32042200	Weak transcription	Left Ventricle	heart
40	chr22:32035200-32042000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr22:32035200-32042000	Weak transcription	NHLF	lung
42	chr22:32035800-32046800	Strong transcription	Fetal Stomach	stomach
43	chr22:32036000-32042800	Weak transcription	Spleen	Spleen
44	chr22:32036000-32043000	Weak transcription	Fetal Kidney	kidney
45	chr22:32036200-32042000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr22:32036200-32042000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr22:32036200-32042000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr22:32036200-32042000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr22:32036200-32042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr22:32036200-32043000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links