Variant report

Variant	rs5998091
Chromosome Location	chr22:32086369-32086370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1013703	0.80[ASN][1000 genomes]
rs1076674	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703079	0.83[AMR][1000 genomes]
rs11703102	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11703798	0.87[AMR][1000 genomes]
rs11704362	0.80[ASN][1000 genomes]
rs11705329	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12157427	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12158002	0.83[AMR][1000 genomes]
rs12160120	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12160737	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166848	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs131222	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131224	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131226	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs131228	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131235	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131237	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131241	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131243	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131246	0.80[ASN][1000 genomes]
rs131251	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131252	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131254	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140079	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs140083	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140085	0.80[ASN][1000 genomes]
rs16989374	0.87[AMR][1000 genomes]
rs2413058	0.80[ASN][1000 genomes]
rs28374732	0.89[AMR][1000 genomes]
rs3804088	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603881	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56406828	0.83[AMR][1000 genomes]
rs5753753	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994417	0.87[AMR][1000 genomes]
rs5994424	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998064	0.87[AMR][1000 genomes]
rs5998065	0.82[AMR][1000 genomes]
rs5998066	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998068	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998070	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998071	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998079	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998080	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998081	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998082	0.94[AMR][1000 genomes]
rs5998084	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998089	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998095	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998099	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998103	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998113	0.80[ASN][1000 genomes]
rs5998114	0.80[ASN][1000 genomes]
rs5998116	0.80[ASN][1000 genomes]
rs60209974	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61273982	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239167	0.86[AMR][1000 genomes]
rs62239185	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62239186	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239187	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239188	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240515	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62240684	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240686	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240687	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7289259	0.80[ASN][1000 genomes]
rs73162139	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs740227	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8136047	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8141719	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8143084	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs81946	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9619221	0.82[AMR][1000 genomes]
rs9619222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619224	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621307	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9621316	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073200-32087200	Weak transcription	Fetal Kidney	kidney
2	chr22:32073200-32089000	Weak transcription	Fetal Brain Male	brain
3	chr22:32073200-32091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr22:32073400-32088200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr22:32073400-32088400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr22:32073400-32088400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr22:32074400-32100400	Weak transcription	K562	blood
10	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
12	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:32077800-32088400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr22:32078000-32088200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr22:32078000-32088400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
17	chr22:32078200-32088600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr22:32078200-32093200	Strong transcription	Fetal Intestine Large	intestine
19	chr22:32078400-32091400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr22:32078400-32093800	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr22:32078400-32101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:32078400-32101200	Strong transcription	Placenta	Placenta
23	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
24	chr22:32078600-32088800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
26	chr22:32078800-32088000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr22:32078800-32088200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr22:32078800-32094200	Strong transcription	Liver	Liver
29	chr22:32078800-32094200	Strong transcription	Duodenum Mucosa	Duodenum
30	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr22:32079000-32088600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr22:32079000-32091400	Strong transcription	Adipose Nuclei	Adipose
35	chr22:32079000-32099000	Weak transcription	Small Intestine	intestine
36	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr22:32079800-32087400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr22:32079800-32088400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr22:32079800-32088600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr22:32080200-32088600	Weak transcription	Brain Angular Gyrus	brain
41	chr22:32080400-32101600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr22:32080600-32087400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr22:32081200-32087200	Weak transcription	Fetal Heart	heart
45	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
46	chr22:32081400-32088200	Weak transcription	HUVEC	blood vessel
47	chr22:32081400-32089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
49	chr22:32081800-32088000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr22:32081800-32089000	Weak transcription	A549	lung

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