Variant report

Variant	rs62240515
Chromosome Location	chr22:32134214-32134215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32133115..32136031-chr22:32148793..32150314,2	MCF-7	breast:
2	22:32128598-32137554..22:32764253-32784733	K562	blood:
3	chr22:32115681..32117567-chr22:32133569..32136551,2	K562	blood:
4	chr22:32134066..32139583-chr22:32142128..32146951,6	MCF-7	breast:
5	chr22:32133170..32135147-chr22:32142547..32144171,2	K562	blood:

Variant related genes	Relation type
ENSG00000183530	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000230736	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1013703	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076674	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11089530	0.93[ASN][1000 genomes]
rs11703040	0.93[ASN][1000 genomes]
rs11703104	0.93[ASN][1000 genomes]
rs11703232	0.93[ASN][1000 genomes]
rs11703275	0.93[ASN][1000 genomes]
rs11703810	0.93[ASN][1000 genomes]
rs11703854	0.93[ASN][1000 genomes]
rs11704362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704377	0.93[ASN][1000 genomes]
rs11705097	0.93[ASN][1000 genomes]
rs11705329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12157427	0.80[ASN][1000 genomes]
rs12157989	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12159673	0.93[ASN][1000 genomes]
rs12160120	0.93[ASN][1000 genomes]
rs12160737	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12166848	0.80[ASN][1000 genomes]
rs131222	0.93[ASN][1000 genomes]
rs131224	0.93[ASN][1000 genomes]
rs131226	0.93[ASN][1000 genomes]
rs131228	0.93[ASN][1000 genomes]
rs131235	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131237	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131241	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131243	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131246	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131251	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131252	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140079	0.93[ASN][1000 genomes]
rs140083	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140085	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989529	0.93[ASN][1000 genomes]
rs2040981	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2413058	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804088	0.80[ASN][1000 genomes]
rs4603881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55645350	0.93[ASN][1000 genomes]
rs55699591	0.93[ASN][1000 genomes]
rs5753753	0.80[ASN][1000 genomes]
rs5994424	0.93[ASN][1000 genomes]
rs5998079	0.80[ASN][1000 genomes]
rs5998080	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998081	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998084	0.80[ASN][1000 genomes]
rs5998085	0.80[AMR][1000 genomes]
rs5998089	0.80[ASN][1000 genomes]
rs5998091	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5998093	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998095	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998098	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998099	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998103	0.93[ASN][1000 genomes]
rs5998113	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998114	1.00[ASN][1000 genomes]
rs5998116	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998123	0.93[ASN][1000 genomes]
rs5998133	0.93[ASN][1000 genomes]
rs5998134	0.93[ASN][1000 genomes]
rs5998135	0.93[ASN][1000 genomes]
rs60136719	0.93[ASN][1000 genomes]
rs60209974	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60669705	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61273982	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238893	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62238895	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62238904	0.93[ASN][1000 genomes]
rs62238906	0.93[ASN][1000 genomes]
rs62239186	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239187	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239188	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62240684	0.93[ASN][1000 genomes]
rs62240686	0.93[ASN][1000 genomes]
rs62240687	0.93[ASN][1000 genomes]
rs7289259	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7289535	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7291898	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73162139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740227	0.93[ASN][1000 genomes]
rs8136047	0.80[ASN][1000 genomes]
rs8141719	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8143084	0.80[ASN][1000 genomes]
rs81946	0.93[ASN][1000 genomes]
rs9619222	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9619224	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9621316	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32112200-32142000	Weak transcription	Hela-S3	cervix
2	chr22:32112200-32145000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32113400-32143800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32113600-32134800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr22:32113600-32142000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr22:32120800-32134400	Weak transcription	Colonic Mucosa	Colon
7	chr22:32121000-32144000	Weak transcription	Fetal Kidney	kidney
8	chr22:32121200-32143600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr22:32121200-32143600	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:32121400-32134400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr22:32121400-32134400	Weak transcription	Esophagus	oesophagus
12	chr22:32121400-32134400	Weak transcription	Ovary	ovary
13	chr22:32121400-32134400	Weak transcription	A549	lung
14	chr22:32121400-32134600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:32121400-32143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr22:32121600-32134400	Weak transcription	Fetal Brain Female	brain
17	chr22:32121600-32144000	Weak transcription	Brain Anterior Caudate	brain
18	chr22:32121600-32144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr22:32121600-32144400	Weak transcription	HSMMtube	muscle
20	chr22:32121600-32144600	Weak transcription	Fetal Brain Male	brain
21	chr22:32122000-32140600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr22:32123200-32134400	Weak transcription	Left Ventricle	heart
23	chr22:32123200-32134400	Weak transcription	Right Atrium	heart
24	chr22:32123200-32134600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr22:32123200-32144600	Weak transcription	Psoas Muscle	Psoas
26	chr22:32123200-32144800	Weak transcription	Right Ventricle	heart
27	chr22:32124200-32144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr22:32124200-32144600	Weak transcription	Spleen	Spleen
29	chr22:32125200-32134400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr22:32125200-32143400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr22:32125200-32143800	Weak transcription	Brain Substantia Nigra	brain
32	chr22:32125200-32144600	Weak transcription	Brain Angular Gyrus	brain
33	chr22:32126000-32135800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr22:32126800-32135200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr22:32128200-32136000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr22:32128400-32139600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr22:32128400-32140800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr22:32128600-32141000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr22:32128600-32143600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr22:32128800-32138000	Weak transcription	GM12878-XiMat	blood
41	chr22:32128800-32144200	Weak transcription	Small Intestine	intestine
42	chr22:32129000-32135000	Strong transcription	Fetal Intestine Small	intestine
43	chr22:32129000-32135000	Weak transcription	Stomach Mucosa	stomach
44	chr22:32129200-32134400	Weak transcription	Liver	Liver
45	chr22:32129200-32134400	Weak transcription	Pancreas	Pancrea
46	chr22:32129200-32134400	Weak transcription	HepG2	liver
47	chr22:32129200-32143800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr22:32129200-32145200	Weak transcription	Gastric	stomach
49	chr22:32129600-32135200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr22:32130600-32135400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links