Variant report

Variant	rs5998098
Chromosome Location	chr22:32100550-32100551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:32100504-32100700	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PRR14L	TF binding region

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1013703	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs1076674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11089530	0.87[ASN][1000 genomes]
rs11703040	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11703079	1.00[CHB][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.88[AMR][1000 genomes]
rs11703102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11703104	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11703232	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs11703275	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11703798	0.84[AMR][1000 genomes]
rs11703810	0.87[ASN][1000 genomes]
rs11703854	0.87[ASN][1000 genomes]
rs11704129	1.00[CHB][hapmap]
rs11704362	0.93[ASN][1000 genomes]
rs11704377	0.87[ASN][1000 genomes]
rs11705097	0.87[ASN][1000 genomes]
rs11705235	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs11705329	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12157427	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12157989	0.87[ASN][1000 genomes]
rs12158002	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs12159673	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12160120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160737	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12166848	0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs131222	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131224	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131226	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs131228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131231	0.92[MEX][hapmap]
rs131235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131241	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131243	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131246	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs131251	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131252	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131254	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs140079	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140083	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs140085	0.93[ASN][1000 genomes]
rs16989291	1.00[MEX][hapmap]
rs16989374	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16989529	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs16989540	0.84[MEX][hapmap]
rs16989600	0.84[MEX][hapmap]
rs16989601	0.84[MEX][hapmap]
rs2040981	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[ASN][1000 genomes]
rs2051583	0.84[MEX][hapmap]
rs2413054	0.85[MEX][hapmap]
rs2413058	0.93[ASN][1000 genomes]
rs28374732	0.86[AMR][1000 genomes]
rs3804088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4603881	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55645350	0.87[ASN][1000 genomes]
rs55699591	0.87[ASN][1000 genomes]
rs56406828	0.88[AMR][1000 genomes]
rs5753682	0.85[MEX][hapmap]
rs5753753	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5994417	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs5994424	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994436	0.88[GIH][hapmap]
rs5998063	0.83[AMR][1000 genomes]
rs5998064	0.84[AMR][1000 genomes]
rs5998065	0.86[AMR][1000 genomes]
rs5998066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5998068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5998070	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5998071	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5998074	0.92[MEX][hapmap]
rs5998079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998081	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998082	0.90[AMR][1000 genomes]
rs5998084	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998089	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998091	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998093	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998095	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998103	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998113	0.93[ASN][1000 genomes]
rs5998114	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.93[ASN][1000 genomes]
rs5998115	0.84[MEX][hapmap]
rs5998116	0.93[ASN][1000 genomes]
rs5998123	0.87[ASN][1000 genomes]
rs5998133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs5998134	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs5998135	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs5998144	0.84[MEX][hapmap]
rs60136719	0.87[ASN][1000 genomes]
rs60209974	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60669705	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61273982	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62238893	0.87[ASN][1000 genomes]
rs62238895	0.87[ASN][1000 genomes]
rs62238904	0.87[ASN][1000 genomes]
rs62238906	0.87[ASN][1000 genomes]
rs62239167	0.90[AMR][1000 genomes]
rs62239185	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62239186	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62239187	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62239188	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240515	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62240684	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240686	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240687	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7289259	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7289535	0.81[ASN][1000 genomes]
rs7291898	0.87[ASN][1000 genomes]
rs73162139	0.93[ASN][1000 genomes]
rs740227	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8136047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8141719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8143084	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs81946	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619221	0.90[AMR][1000 genomes]
rs9619222	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9619224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9621307	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9621316	0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
4	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
6	chr22:32078400-32101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:32078400-32101200	Strong transcription	Placenta	Placenta
8	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
9	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
10	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr22:32080400-32101600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
17	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
18	chr22:32086400-32101000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr22:32086400-32101200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr22:32087000-32101200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr22:32087000-32101200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr22:32087200-32101200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr22:32087200-32101200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr22:32087200-32101200	Strong transcription	Dnd41	blood
25	chr22:32087400-32101000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr22:32087400-32101200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr22:32087400-32101200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr22:32087400-32101200	Strong transcription	Fetal Muscle Leg	muscle
29	chr22:32087400-32101800	Strong transcription	Fetal Thymus	thymus
30	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr22:32088000-32101000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr22:32088400-32101200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr22:32088600-32101600	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr22:32088600-32103400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr22:32088800-32101000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr22:32088800-32101200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr22:32089000-32102200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr22:32089000-32102600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr22:32089200-32101600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr22:32089200-32101800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr22:32089200-32113800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:32089400-32101000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr22:32089400-32126000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr22:32089600-32101200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr22:32089800-32108000	Weak transcription	A549	lung
46	chr22:32091200-32101200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr22:32091200-32101200	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr22:32091800-32101200	Strong transcription	Adipose Nuclei	Adipose
49	chr22:32091800-32108200	Weak transcription	Pancreas	Pancrea
50	chr22:32092000-32113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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