Variant report

Variant	rs11705235
Chromosome Location	chr22:32135488-32135489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32133115..32136031-chr22:32148793..32150314,2	MCF-7	breast:
2	22:32128598-32137554..22:32764253-32784733	K562	blood:
3	chr22:32115681..32117567-chr22:32133569..32136551,2	K562	blood:
4	chr22:32134066..32139583-chr22:32142128..32146951,6	MCF-7	breast:
5	chr22:32134407..32136831-chr22:32143148..32146074,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241954	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000230736	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1013703	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs1076674	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs11703040	1.00[CHB][hapmap]
rs11703079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs11703102	1.00[CHB][hapmap]
rs11703104	1.00[CHB][hapmap]
rs11703232	1.00[CHB][hapmap]
rs11703275	1.00[CHB][hapmap]
rs11703798	0.88[EUR][1000 genomes]
rs11703801	0.91[ASN][1000 genomes]
rs11704129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11704362	0.82[AMR][1000 genomes]
rs11705329	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs12158002	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs12159673	1.00[CHB][hapmap]
rs12160120	1.00[CHB][hapmap]
rs131228	1.00[CHB][hapmap]
rs131235	1.00[CHB][hapmap]
rs131237	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs131243	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs131246	1.00[CHB][hapmap]
rs131252	1.00[CHB][hapmap]
rs131254	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs140079	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs16989291	0.84[MEX][hapmap]
rs16989374	1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs16989529	1.00[CHB][hapmap]
rs16989540	0.84[MEX][hapmap]
rs16989600	0.84[MEX][hapmap]
rs16989601	1.00[ASW][hapmap];0.84[MEX][hapmap]
rs2040981	1.00[CHB][hapmap]
rs2051583	0.84[MEX][hapmap]
rs2413058	0.81[AMR][1000 genomes]
rs28374732	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747156	1.00[YRI][hapmap]
rs3804088	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs56406828	0.88[EUR][1000 genomes]
rs5994417	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs5994424	0.82[AMR][1000 genomes]
rs5998064	0.88[EUR][1000 genomes]
rs5998065	0.82[EUR][1000 genomes]
rs5998066	1.00[CHB][hapmap]
rs5998068	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs5998079	1.00[CHB][hapmap]
rs5998080	1.00[CHB][hapmap]
rs5998082	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5998085	1.00[CHB][hapmap]
rs5998098	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs5998099	1.00[CHB][hapmap]
rs5998114	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs5998115	0.84[MEX][hapmap]
rs5998133	1.00[CHB][hapmap]
rs5998134	1.00[CHB][hapmap]
rs5998135	1.00[CHB][hapmap]
rs5998144	0.84[MEX][hapmap]
rs62240686	0.82[AMR][1000 genomes]
rs62240687	0.82[AMR][1000 genomes]
rs7289259	1.00[CHB][hapmap]
rs73162139	0.83[AMR][1000 genomes]
rs8136047	1.00[CHB][hapmap]
rs8141719	1.00[CHB][hapmap]
rs9619221	0.88[EUR][1000 genomes]
rs9619224	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32112200-32142000	Weak transcription	Hela-S3	cervix
2	chr22:32112200-32145000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32113400-32143800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32113600-32142000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:32121000-32144000	Weak transcription	Fetal Kidney	kidney
6	chr22:32121200-32143600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr22:32121200-32143600	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:32121400-32143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr22:32121600-32144000	Weak transcription	Brain Anterior Caudate	brain
10	chr22:32121600-32144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr22:32121600-32144400	Weak transcription	HSMMtube	muscle
12	chr22:32121600-32144600	Weak transcription	Fetal Brain Male	brain
13	chr22:32122000-32140600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr22:32123200-32144600	Weak transcription	Psoas Muscle	Psoas
15	chr22:32123200-32144800	Weak transcription	Right Ventricle	heart
16	chr22:32124200-32144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr22:32124200-32144600	Weak transcription	Spleen	Spleen
18	chr22:32125200-32143400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr22:32125200-32143800	Weak transcription	Brain Substantia Nigra	brain
20	chr22:32125200-32144600	Weak transcription	Brain Angular Gyrus	brain
21	chr22:32126000-32135800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr22:32128200-32136000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr22:32128400-32139600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr22:32128400-32140800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr22:32128600-32141000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr22:32128600-32143600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr22:32128800-32138000	Weak transcription	GM12878-XiMat	blood
28	chr22:32128800-32144200	Weak transcription	Small Intestine	intestine
29	chr22:32129200-32143800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr22:32129200-32145200	Weak transcription	Gastric	stomach
31	chr22:32130600-32143600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr22:32130800-32143200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr22:32130800-32145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr22:32131000-32135800	Weak transcription	Aorta	Aorta
35	chr22:32131000-32136800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr22:32131000-32143800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr22:32131000-32144000	Weak transcription	NHLF	lung
38	chr22:32131800-32136600	Strong transcription	Placenta	Placenta
39	chr22:32131800-32143800	Weak transcription	Fetal Heart	heart
40	chr22:32132400-32135800	Strong transcription	NHEK	skin
41	chr22:32132400-32136200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr22:32132400-32136200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr22:32132400-32136600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr22:32132400-32136800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr22:32132400-32136800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr22:32132400-32136800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr22:32132400-32136800	Strong transcription	Fetal Muscle Leg	muscle
48	chr22:32132400-32137000	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr22:32132400-32137000	Strong transcription	Fetal Intestine Large	intestine
50	chr22:32132400-32137400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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