Variant report

Variant	rs11703040
Chromosome Location	chr22:32227930-32227931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32215168-32228866..22:32342898-32343477	K562	blood:
2	chr22:32148000..32150313-chr22:32226474..32228299,2	K562	blood:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1013703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1076674	1.00[CHB][hapmap]
rs11089530	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11089531	0.82[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11703079	1.00[CHB][hapmap]
rs11703102	1.00[CHB][hapmap]
rs11703104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703854	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704129	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11704362	0.93[ASN][1000 genomes]
rs11704377	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705097	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705235	1.00[CHB][hapmap]
rs11705329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs12157989	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12158002	1.00[CHB][hapmap]
rs12159673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160120	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs131222	0.87[ASN][1000 genomes]
rs131224	0.87[ASN][1000 genomes]
rs131226	0.87[ASN][1000 genomes]
rs131228	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs131235	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs131237	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs131241	0.93[ASN][1000 genomes]
rs131243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs131246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs131251	0.93[ASN][1000 genomes]
rs131252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs131254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs140079	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs140083	0.93[ASN][1000 genomes]
rs140085	0.93[ASN][1000 genomes]
rs16989374	1.00[CHB][hapmap]
rs16989529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989540	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs16989600	1.00[YRI][hapmap]
rs2040981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413058	1.00[CEU][hapmap];0.93[ASN][1000 genomes]
rs3804088	1.00[CHB][hapmap]
rs4603881	0.93[ASN][1000 genomes]
rs55645350	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55699591	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994417	1.00[CHB][hapmap]
rs5994424	0.87[ASN][1000 genomes]
rs5994435	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs5994436	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs5998066	1.00[CHB][hapmap]
rs5998068	1.00[CHB][hapmap]
rs5998079	1.00[CHB][hapmap]
rs5998080	1.00[CHB][hapmap]
rs5998085	1.00[CHB][hapmap]
rs5998093	0.87[ASN][1000 genomes]
rs5998095	0.87[ASN][1000 genomes]
rs5998098	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs5998099	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs5998103	0.87[ASN][1000 genomes]
rs5998113	0.93[ASN][1000 genomes]
rs5998114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs5998116	0.93[ASN][1000 genomes]
rs5998123	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998144	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs5998161	0.84[AMR][1000 genomes]
rs5998173	1.00[JPT][hapmap]
rs60136719	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.87[ASN][1000 genomes]
rs61273982	0.93[ASN][1000 genomes]
rs62238893	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238895	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238904	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238906	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238934	0.88[AMR][1000 genomes]
rs62240515	0.93[ASN][1000 genomes]
rs62240684	0.87[ASN][1000 genomes]
rs62240686	0.87[ASN][1000 genomes]
rs62240687	0.87[ASN][1000 genomes]
rs7289259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7289535	0.81[ASN][1000 genomes]
rs7289702	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs7291898	1.00[ASN][1000 genomes]
rs73162139	0.93[ASN][1000 genomes]
rs740227	0.87[ASN][1000 genomes]
rs8136047	1.00[CHB][hapmap]
rs8141719	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs81946	0.87[ASN][1000 genomes]
rs9619224	1.00[CHB][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr22:32193200-32228400	Strong transcription	Adipose Nuclei	Adipose
8	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
11	chr22:32205000-32228200	Strong transcription	Fetal Muscle Leg	muscle
12	chr22:32205000-32228600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
16	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
18	chr22:32212000-32228200	Strong transcription	Fetal Intestine Large	intestine
19	chr22:32216000-32239200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr22:32218200-32242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr22:32218600-32241200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr22:32218800-32241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
24	chr22:32219000-32240200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr22:32219200-32231800	Weak transcription	Colonic Mucosa	Colon
26	chr22:32219200-32232000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr22:32219200-32243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr22:32219600-32231400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr22:32219600-32233400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr22:32220000-32231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr22:32220000-32239600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr22:32220000-32240400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr22:32220200-32234400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr22:32220200-32241000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr22:32220400-32240800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr22:32221000-32241800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr22:32222000-32230000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr22:32222000-32240800	Weak transcription	Small Intestine	intestine
40	chr22:32222600-32232600	Weak transcription	Brain Anterior Caudate	brain
41	chr22:32223200-32228400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr22:32223200-32236400	Weak transcription	Brain Angular Gyrus	brain
43	chr22:32223200-32242800	Weak transcription	Fetal Brain Male	brain
44	chr22:32223400-32232600	Weak transcription	Brain Substantia Nigra	brain
45	chr22:32223400-32234400	Weak transcription	Fetal Kidney	kidney
46	chr22:32223400-32236400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr22:32224000-32229600	Weak transcription	Fetal Lung	lung
48	chr22:32224000-32231000	Weak transcription	Lung	lung
49	chr22:32225200-32229600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr22:32225200-32229800	Weak transcription	Brain Hippocampus Middle	brain

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