The 2.0 version of rSNPBase

Variant report

Variant rs5998103
Chromosome Location chr22:32105841-32105842
allele A/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:32073400-32111800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr22:32076600-32107600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr22:32077200-32108000 Weak transcription Psoas Muscle Psoas
4 chr22:32077200-32109200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr22:32078000-32111400 Strong transcription Fetal Intestine Small intestine
6 chr22:32078400-32111800 Strong transcription Fetal Stomach stomach
7 chr22:32078800-32107800 Strong transcription Fetal Adrenal Gland Adrenal Gland
8 chr22:32078800-32126000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr22:32079000-32113800 Strong transcription Fetal Muscle Trunk muscle
10 chr22:32080400-32121400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr22:32081200-32126400 Weak transcription Stomach Mucosa stomach
12 chr22:32081600-32110600 Weak transcription Hela-S3 cervix
13 chr22:32089200-32113800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr22:32089400-32126000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
15 chr22:32089800-32108000 Weak transcription A549 lung
16 chr22:32091800-32108200 Weak transcription Pancreas Pancrea
17 chr22:32092000-32113800 Strong transcription Primary hematopoietic stem cells short term culture blood
18 chr22:32093800-32108000 Weak transcription Fetal Brain Male brain
19 chr22:32095400-32113400 Strong transcription Fetal Intestine Large intestine
20 chr22:32098200-32107800 Weak transcription Colonic Mucosa Colon
21 chr22:32098600-32111600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr22:32099400-32110000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr22:32099600-32106200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr22:32099600-32108000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr22:32099600-32108000 Weak transcription Fetal Kidney kidney
26 chr22:32099600-32111400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr22:32099800-32108000 Weak transcription Small Intestine intestine
28 chr22:32100800-32106200 Weak transcription HepG2 liver
29 chr22:32100800-32106200 Weak transcription NH-A brain
30 chr22:32100800-32107800 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr22:32100800-32107800 Weak transcription Rectal Smooth Muscle rectum
32 chr22:32100800-32108000 Weak transcription Brain Anterior Caudate brain
33 chr22:32100800-32108000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr22:32100800-32108000 Weak transcription K562 blood
35 chr22:32100800-32108800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr22:32101000-32106000 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr22:32101000-32106000 Weak transcription Brain Hippocampus Middle brain
38 chr22:32101000-32106200 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr22:32101000-32106600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr22:32101000-32106600 Weak transcription Primary B cells from cord blood blood
41 chr22:32101000-32106600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr22:32101000-32106600 Weak transcription Colon Smooth Muscle Colon
43 chr22:32101000-32106800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr22:32101000-32106800 Weak transcription Brain Inferior Temporal Lobe brain
45 chr22:32101000-32106800 Weak transcription GM12878-XiMat blood
46 chr22:32101000-32107000 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr22:32101000-32107000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr22:32101000-32107800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr22:32101000-32107800 Weak transcription Brain Substantia Nigra brain
50 chr22:32101000-32108000 Weak transcription Primary hematopoietic stem cells blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015