Variant report

Variant	rs62239188
Chromosome Location	chr22:32075539-32075540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32073218..32076018-chr22:32078254..32080089,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1013703	0.80[ASN][1000 genomes]
rs1076674	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703079	0.87[AMR][1000 genomes]
rs11703102	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11703798	0.87[AMR][1000 genomes]
rs11704362	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11705329	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12157427	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12158002	0.87[AMR][1000 genomes]
rs12160120	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12160737	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166848	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs131222	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131224	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131226	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs131228	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131235	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131237	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs131241	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131243	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131246	0.80[ASN][1000 genomes]
rs131251	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131252	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs131254	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140079	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs140083	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs140085	0.80[ASN][1000 genomes]
rs16989374	0.87[AMR][1000 genomes]
rs2413058	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28374732	0.89[AMR][1000 genomes]
rs3804088	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603881	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56406828	0.87[AMR][1000 genomes]
rs5753753	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994417	0.87[AMR][1000 genomes]
rs5994424	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998063	0.83[AMR][1000 genomes]
rs5998064	0.87[AMR][1000 genomes]
rs5998065	0.85[AMR][1000 genomes]
rs5998066	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998068	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998070	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998071	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5998079	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998080	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998081	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998082	0.94[AMR][1000 genomes]
rs5998084	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998085	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998089	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998091	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998093	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998095	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998098	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998103	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5998113	0.80[ASN][1000 genomes]
rs5998114	0.80[ASN][1000 genomes]
rs5998116	0.80[ASN][1000 genomes]
rs60209974	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61273982	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62239167	0.90[AMR][1000 genomes]
rs62239185	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62239186	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239187	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240515	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62240684	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240686	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62240687	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7289259	0.80[ASN][1000 genomes]
rs73162139	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs740227	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8136047	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8141719	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8143084	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs81946	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9619221	0.85[AMR][1000 genomes]
rs9619222	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619224	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621307	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9621316	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32067400-32078800	Weak transcription	HepG2	liver
2	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
3	chr22:32072600-32078800	Weak transcription	Esophagus	oesophagus
4	chr22:32072600-32080600	Weak transcription	Fetal Heart	heart
5	chr22:32072600-32081000	Weak transcription	Aorta	Aorta
6	chr22:32072800-32076000	Weak transcription	NHLF	lung
7	chr22:32072800-32077200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr22:32073000-32076800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr22:32073000-32079000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr22:32073200-32075800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr22:32073200-32075800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr22:32073200-32075800	Weak transcription	HSMM	muscle
13	chr22:32073200-32075800	Weak transcription	HSMMtube	muscle
14	chr22:32073200-32075800	Weak transcription	NHDF-Ad	bronchial
15	chr22:32073200-32076200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr22:32073200-32076200	Weak transcription	Colon Smooth Muscle	Colon
17	chr22:32073200-32076200	Weak transcription	HMEC	breast
18	chr22:32073200-32076400	Weak transcription	Ovary	ovary
19	chr22:32073200-32076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr22:32073200-32076600	Weak transcription	NH-A	brain
21	chr22:32073200-32076800	Weak transcription	Left Ventricle	heart
22	chr22:32073200-32076800	Weak transcription	Psoas Muscle	Psoas
23	chr22:32073200-32076800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr22:32073200-32078200	Weak transcription	Fetal Intestine Large	intestine
25	chr22:32073200-32078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr22:32073200-32078600	Weak transcription	Brain Angular Gyrus	brain
27	chr22:32073200-32078600	Weak transcription	Colonic Mucosa	Colon
28	chr22:32073200-32078600	Weak transcription	Right Ventricle	heart
29	chr22:32073200-32078600	Weak transcription	Spleen	Spleen
30	chr22:32073200-32078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr22:32073200-32078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr22:32073200-32078800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr22:32073200-32079000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr22:32073200-32079000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr22:32073200-32079000	Weak transcription	GM12878-XiMat	blood
36	chr22:32073200-32079200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr22:32073200-32079200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr22:32073200-32079200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr22:32073200-32079200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr22:32073200-32079200	Weak transcription	Brain Substantia Nigra	brain
41	chr22:32073200-32079200	Weak transcription	Fetal Lung	lung
42	chr22:32073200-32079200	Weak transcription	Pancreas	Pancrea
43	chr22:32073200-32079400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr22:32073200-32080800	Weak transcription	Stomach Mucosa	stomach
45	chr22:32073200-32080800	Weak transcription	A549	lung
46	chr22:32073200-32087200	Weak transcription	Fetal Kidney	kidney
47	chr22:32073200-32089000	Weak transcription	Fetal Brain Male	brain
48	chr22:32073200-32091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr22:32073400-32075600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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