Variant report

Variant	rs5998085
Chromosome Location	chr22:32076955-32076956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32071157..32073210-chr22:32075735..32077761,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1013703	1.00[CHB][hapmap]
rs1076674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11703040	1.00[CHB][hapmap]
rs11703079	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs11703102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11703104	1.00[CHB][hapmap]
rs11703232	1.00[CHB][hapmap]
rs11703275	1.00[CHB][hapmap]
rs11703798	0.87[AMR][1000 genomes]
rs11704129	1.00[CHB][hapmap]
rs11705235	1.00[CHB][hapmap]
rs11705329	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs12157427	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12158002	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12159673	1.00[CHB][hapmap]
rs12160120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12160737	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12166848	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs131222	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs131224	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs131226	0.85[AMR][1000 genomes]
rs131228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs131235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs131237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs131241	0.82[AMR][1000 genomes]
rs131243	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs131246	1.00[CHB][hapmap]
rs131251	0.80[AMR][1000 genomes]
rs131252	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs131254	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs140079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs140083	0.82[AMR][1000 genomes]
rs16989374	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs16989529	1.00[CHB][hapmap]
rs2040981	1.00[CHB][hapmap]
rs2413058	0.82[CEU][hapmap]
rs28374732	0.89[AMR][1000 genomes]
rs3804088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4603881	0.80[AMR][1000 genomes]
rs56406828	0.83[AMR][1000 genomes]
rs5753753	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5994417	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs5994424	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998064	0.87[AMR][1000 genomes]
rs5998065	0.82[AMR][1000 genomes]
rs5998066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998070	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998071	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998081	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998082	0.94[AMR][1000 genomes]
rs5998084	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998089	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5998095	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5998098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998103	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998114	1.00[CHB][hapmap]
rs5998133	1.00[CHB][hapmap]
rs5998134	1.00[CHB][hapmap]
rs5998135	1.00[CHB][hapmap]
rs60209974	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60669705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61273982	0.80[AMR][1000 genomes]
rs62239167	0.86[AMR][1000 genomes]
rs62239185	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62239186	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62239187	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62239188	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62240515	0.80[AMR][1000 genomes]
rs62240684	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62240686	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62240687	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7289259	1.00[CHB][hapmap]
rs73162139	0.82[AMR][1000 genomes]
rs740227	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8136047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8141719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8143084	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs81946	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619221	0.82[AMR][1000 genomes]
rs9619222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9619224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9621307	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9621316	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32067400-32078800	Weak transcription	HepG2	liver
2	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
3	chr22:32072600-32078800	Weak transcription	Esophagus	oesophagus
4	chr22:32072600-32080600	Weak transcription	Fetal Heart	heart
5	chr22:32072600-32081000	Weak transcription	Aorta	Aorta
6	chr22:32072800-32077200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:32073000-32079000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr22:32073200-32078200	Weak transcription	Fetal Intestine Large	intestine
9	chr22:32073200-32078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr22:32073200-32078600	Weak transcription	Brain Angular Gyrus	brain
11	chr22:32073200-32078600	Weak transcription	Colonic Mucosa	Colon
12	chr22:32073200-32078600	Weak transcription	Right Ventricle	heart
13	chr22:32073200-32078600	Weak transcription	Spleen	Spleen
14	chr22:32073200-32078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr22:32073200-32078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr22:32073200-32078800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr22:32073200-32079000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr22:32073200-32079000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr22:32073200-32079000	Weak transcription	GM12878-XiMat	blood
20	chr22:32073200-32079200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr22:32073200-32079200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr22:32073200-32079200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:32073200-32079200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr22:32073200-32079200	Weak transcription	Brain Substantia Nigra	brain
25	chr22:32073200-32079200	Weak transcription	Fetal Lung	lung
26	chr22:32073200-32079200	Weak transcription	Pancreas	Pancrea
27	chr22:32073200-32079400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr22:32073200-32080800	Weak transcription	Stomach Mucosa	stomach
29	chr22:32073200-32080800	Weak transcription	A549	lung
30	chr22:32073200-32087200	Weak transcription	Fetal Kidney	kidney
31	chr22:32073200-32089000	Weak transcription	Fetal Brain Male	brain
32	chr22:32073200-32091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr22:32073400-32077800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr22:32073400-32078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr22:32073400-32078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr22:32073400-32078000	Weak transcription	Fetal Intestine Small	intestine
38	chr22:32073400-32078200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr22:32073400-32078200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr22:32073400-32078200	Weak transcription	Fetal Stomach	stomach
41	chr22:32073400-32078400	Weak transcription	Placenta	Placenta
42	chr22:32073400-32078600	Weak transcription	Primary T cells from cord blood	blood
43	chr22:32073400-32078600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr22:32073400-32078600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr22:32073400-32078600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr22:32073400-32078600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr22:32073400-32078600	Weak transcription	Brain Germinal Matrix	brain
48	chr22:32073400-32078600	Weak transcription	Thymus	Thymus
49	chr22:32073400-32078800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr22:32073400-32078800	Weak transcription	Primary T cells fromperipheralblood	blood

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