Variant report

Variant	rs28374732
Chromosome Location	chr22:32102774-32102775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32102727-32109893..22:32846948-32860159	GM12878	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1076674	0.84[AMR][1000 genomes]
rs11703079	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11703798	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11703801	0.91[ASN][1000 genomes]
rs11704129	0.91[ASN][1000 genomes]
rs11705235	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12157427	0.91[AMR][1000 genomes]
rs12158002	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12160120	0.89[AMR][1000 genomes]
rs12160737	0.87[AMR][1000 genomes]
rs12166848	0.84[AMR][1000 genomes]
rs131222	0.89[AMR][1000 genomes]
rs131224	0.89[AMR][1000 genomes]
rs131226	0.87[AMR][1000 genomes]
rs131228	0.87[AMR][1000 genomes]
rs131235	0.87[AMR][1000 genomes]
rs131237	0.87[AMR][1000 genomes]
rs140079	0.89[AMR][1000 genomes]
rs16989374	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2413058	0.81[AMR][1000 genomes]
rs3804088	0.91[AMR][1000 genomes]
rs56406828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5753753	0.91[AMR][1000 genomes]
rs5994417	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5994424	0.95[AMR][1000 genomes]
rs5998064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998065	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5998079	0.91[AMR][1000 genomes]
rs5998080	0.84[AMR][1000 genomes]
rs5998081	0.87[AMR][1000 genomes]
rs5998082	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5998084	0.91[AMR][1000 genomes]
rs5998085	0.89[AMR][1000 genomes]
rs5998089	0.91[AMR][1000 genomes]
rs5998091	0.89[AMR][1000 genomes]
rs5998093	0.89[AMR][1000 genomes]
rs5998095	0.87[AMR][1000 genomes]
rs5998098	0.86[AMR][1000 genomes]
rs5998099	0.89[AMR][1000 genomes]
rs5998103	0.86[AMR][1000 genomes]
rs60209974	0.82[AMR][1000 genomes]
rs60669705	0.84[AMR][1000 genomes]
rs62239185	0.80[AMR][1000 genomes]
rs62239186	0.87[AMR][1000 genomes]
rs62239187	0.84[AMR][1000 genomes]
rs62239188	0.89[AMR][1000 genomes]
rs62240684	0.91[AMR][1000 genomes]
rs62240686	0.95[AMR][1000 genomes]
rs62240687	0.95[AMR][1000 genomes]
rs740227	0.91[AMR][1000 genomes]
rs8136047	0.84[AMR][1000 genomes]
rs8141719	0.87[AMR][1000 genomes]
rs8143084	0.91[AMR][1000 genomes]
rs81946	0.87[AMR][1000 genomes]
rs9619221	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619222	0.84[AMR][1000 genomes]
rs9619224	0.86[AMR][1000 genomes]
rs9621316	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
4	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
6	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
7	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
13	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
14	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr22:32088600-32103400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr22:32089200-32113800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:32089400-32126000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:32089800-32108000	Weak transcription	A549	lung
19	chr22:32091800-32108200	Weak transcription	Pancreas	Pancrea
20	chr22:32092000-32113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr22:32093800-32108000	Weak transcription	Fetal Brain Male	brain
22	chr22:32095000-32104400	Strong transcription	Liver	Liver
23	chr22:32095400-32113400	Strong transcription	Fetal Intestine Large	intestine
24	chr22:32098200-32107800	Weak transcription	Colonic Mucosa	Colon
25	chr22:32098600-32111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr22:32099400-32110000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr22:32099600-32105800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr22:32099600-32106200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr22:32099600-32108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr22:32099600-32108000	Weak transcription	Fetal Kidney	kidney
31	chr22:32099600-32111400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr22:32099800-32108000	Weak transcription	Small Intestine	intestine
33	chr22:32100800-32105800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr22:32100800-32106200	Weak transcription	HepG2	liver
35	chr22:32100800-32106200	Weak transcription	NH-A	brain
36	chr22:32100800-32107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr22:32100800-32107800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr22:32100800-32108000	Weak transcription	Brain Anterior Caudate	brain
39	chr22:32100800-32108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr22:32100800-32108000	Weak transcription	K562	blood
41	chr22:32100800-32108800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr22:32101000-32103200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr22:32101000-32104600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr22:32101000-32105000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr22:32101000-32105200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr22:32101000-32105200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr22:32101000-32105800	Weak transcription	Fetal Brain Female	brain
48	chr22:32101000-32106000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr22:32101000-32106000	Weak transcription	Brain Hippocampus Middle	brain
50	chr22:32101000-32106200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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