Variant report

Variant	rs11705097
Chromosome Location	chr22:32170898-32170899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32170492-32188129..22:33178968-33185617	Hela-S3	cervix:
2	22:31936958-31958600..22:32170492-32188129	GM12878	blood:
3	22:32170492-32188129..22:32284948-32287956	Hela-S3	cervix:
4	22:32170492-32188129..22:32347255-32351014	K562	blood:
5	22:32170492-32188129..22:32846948-32860159	K562	blood:

Variant related genes	Relation type
ENSG00000238910	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000229673	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1013703	0.93[ASN][1000 genomes]
rs11089530	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11089531	0.85[AMR][1000 genomes]
rs11703040	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703104	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703232	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703275	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703810	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703854	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704362	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11704377	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705329	0.93[ASN][1000 genomes]
rs12157989	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12159673	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160120	0.87[ASN][1000 genomes]
rs131222	0.87[ASN][1000 genomes]
rs131224	0.87[ASN][1000 genomes]
rs131226	0.87[ASN][1000 genomes]
rs131228	0.87[ASN][1000 genomes]
rs131235	0.87[ASN][1000 genomes]
rs131237	0.87[ASN][1000 genomes]
rs131241	0.93[ASN][1000 genomes]
rs131243	0.93[ASN][1000 genomes]
rs131246	0.93[ASN][1000 genomes]
rs131251	0.93[ASN][1000 genomes]
rs131252	0.93[ASN][1000 genomes]
rs131254	0.93[ASN][1000 genomes]
rs140079	0.87[ASN][1000 genomes]
rs140083	0.93[ASN][1000 genomes]
rs140085	0.93[ASN][1000 genomes]
rs16989529	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040981	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413058	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4603881	0.93[ASN][1000 genomes]
rs55645350	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55699591	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994424	0.87[ASN][1000 genomes]
rs5994435	0.82[AMR][1000 genomes]
rs5994436	0.83[AMR][1000 genomes]
rs5998093	0.87[ASN][1000 genomes]
rs5998095	0.87[ASN][1000 genomes]
rs5998098	0.87[ASN][1000 genomes]
rs5998099	0.87[ASN][1000 genomes]
rs5998103	0.87[ASN][1000 genomes]
rs5998113	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs5998114	0.93[ASN][1000 genomes]
rs5998116	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998123	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998133	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998134	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998135	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60136719	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60669705	0.87[ASN][1000 genomes]
rs61273982	0.93[ASN][1000 genomes]
rs62238893	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238895	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238904	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238906	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240515	0.93[ASN][1000 genomes]
rs62240684	0.87[ASN][1000 genomes]
rs62240686	0.87[ASN][1000 genomes]
rs62240687	0.87[ASN][1000 genomes]
rs7289259	0.93[ASN][1000 genomes]
rs7289535	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7291898	1.00[ASN][1000 genomes]
rs73162139	0.93[ASN][1000 genomes]
rs740227	0.87[ASN][1000 genomes]
rs8141719	0.87[ASN][1000 genomes]
rs81946	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150400-32174200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32150600-32172600	Weak transcription	Small Intestine	intestine
3	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32151000-32174400	Weak transcription	Psoas Muscle	Psoas
5	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:32151200-32174800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:32151200-32181000	Weak transcription	NHDF-Ad	bronchial
8	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:32151600-32178200	Weak transcription	Stomach Mucosa	stomach
10	chr22:32151800-32173800	Weak transcription	HepG2	liver
11	chr22:32152200-32184000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr22:32152400-32187000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:32153000-32181600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr22:32153400-32187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr22:32153800-32183800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr22:32154000-32182000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr22:32154000-32188600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr22:32154200-32171000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr22:32154200-32180600	Strong transcription	Fetal Stomach	stomach
20	chr22:32154200-32184000	Strong transcription	Liver	Liver
21	chr22:32154400-32188200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr22:32156200-32182200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr22:32156400-32184000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:32156800-32172400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr22:32158400-32172000	Weak transcription	Fetal Brain Male	brain
26	chr22:32159000-32177000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr22:32159200-32171200	Strong transcription	Placenta	Placenta
28	chr22:32159200-32179600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr22:32159400-32184200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr22:32159600-32186600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr22:32160800-32171000	Strong transcription	Lung	lung
33	chr22:32161400-32174400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr22:32162000-32173800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr22:32162000-32173800	Weak transcription	Esophagus	oesophagus
36	chr22:32162000-32173800	Weak transcription	Pancreas	Pancrea
37	chr22:32162000-32174600	Weak transcription	Right Ventricle	heart
38	chr22:32162400-32174400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr22:32162600-32174000	Weak transcription	NHEK	skin
40	chr22:32162600-32174200	Weak transcription	HSMMtube	muscle
41	chr22:32162600-32174600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr22:32162800-32173800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr22:32162800-32174000	Weak transcription	Brain Angular Gyrus	brain
44	chr22:32163000-32171400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr22:32163000-32174000	Weak transcription	Fetal Kidney	kidney
46	chr22:32163000-32174600	Weak transcription	A549	lung
47	chr22:32163200-32174600	Weak transcription	HMEC	breast
48	chr22:32163200-32185400	Weak transcription	Fetal Heart	heart
49	chr22:32164000-32182200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr22:32164200-32171800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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