Variant report
| Variant | rs11706305 |
|---|---|
| Chromosome Location | chr3:156711204-156711205 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156707287..156709833-chr3:156710398..156713126,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1032041 | 0.87[EUR][1000 genomes] |
| rs1032044 | 0.85[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10936054 | 0.86[EUR][1000 genomes] |
| rs10936055 | 0.86[EUR][1000 genomes] |
| rs12636741 | 0.87[EUR][1000 genomes] |
| rs12638952 | 0.90[EUR][1000 genomes] |
| rs1482866 | 0.90[EUR][1000 genomes] |
| rs1600978 | 0.90[EUR][1000 genomes] |
| rs2046270 | 0.90[EUR][1000 genomes] |
| rs35354535 | 0.90[EUR][1000 genomes] |
| rs6799034 | 0.90[EUR][1000 genomes] |
| rs7612970 | 0.83[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs7616314 | 0.89[EUR][1000 genomes] |
| rs7624328 | 0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7637445 | 0.90[EUR][1000 genomes] |
| rs9818874 | 0.90[EUR][1000 genomes] |
| rs9829685 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3349885 | chr3:156685409-156878910 | Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 141 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156705200-156717200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
