Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156698217..156700249-chr3:156702856..156704415,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1032041	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs1032044	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10936054	0.88[JPT][hapmap]
rs10936055	0.88[JPT][hapmap]
rs11706305	0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs11715321	0.88[JPT][hapmap]
rs11720579	0.88[JPT][hapmap]
rs12636741	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs13082176	0.83[JPT][hapmap]
rs1384541	0.82[JPT][hapmap]
rs1482854	0.83[JPT][hapmap]
rs1482855	0.88[JPT][hapmap]
rs1482856	0.88[JPT][hapmap]
rs1482857	0.83[JPT][hapmap]
rs1600978	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs1842840	0.88[JPT][hapmap]
rs2046269	0.83[JPT][hapmap]
rs2046270	0.82[CEU][hapmap]
rs2128535	0.81[JPT][hapmap]
rs4263246	0.83[JPT][hapmap]
rs4680332	0.88[JPT][hapmap]
rs6799034	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs7616314	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs7624328	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9811993	0.83[JPT][hapmap]
rs9829685	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9850675	0.85[CHB][hapmap]
rs9859727	0.83[JPT][hapmap]
rs9867766	0.88[JPT][hapmap]
rs9878410	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156698200-156702200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156698400-156704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:156698800-156701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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